These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAACGAACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTTCAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC] [+] EMBL BM607164 [CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAACGAACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTTCAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC] consensusID : consensus_1957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGC] [+] EMBL BM603057 [CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1957#0 CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCG 60 consensus_1957#1 ---------------------CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCG 39 * * *** * * *********************** consensus_1957#0 TTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAA--CGAACCGCTGTCGGA 118 consensus_1957#1 TTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGA 99 ******************************************* ** ************ consensus_1957#0 AAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACC 178 consensus_1957#1 AAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACC 159 ************************************************************ consensus_1957#0 GCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGAT 238 consensus_1957#1 GCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGAT 219 ************************************************************ consensus_1957#0 GGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCG 298 consensus_1957#1 GGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCG 279 ************************************************************ consensus_1957#0 CCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCC 358 consensus_1957#1 CCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCC 339 ************************************************************ consensus_1957#0 CTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCA 418 consensus_1957#1 CTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCA 399 ************************************************************ consensus_1957#0 GCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGC 478 consensus_1957#1 GCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGC 459 ************************************************************ consensus_1957#0 GGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCAT 538 consensus_1957#1 GGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCAT 519 ************************************************************ consensus_1957#0 CGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGG 598 consensus_1957#1 CGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGG 579 **************** ************** **************************** consensus_1957#0 AGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTT 658 consensus_1957#1 AGGCTCCAAGAAAGC--------------------------------------------- 594 *************** consensus_1957#0 CAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC 705 consensus_1957#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||