cluster # 1957

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Anopheles gambiae
cluster # 1957 cluster # 1957 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1957#0 length = 705 sequences # 1

consensus_1957#1 length = 594 sequences # 1

consensusID : consensus_1957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAACGAACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTTCAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC]

[+] EMBL BM607164             [CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAACGAACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTTCAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC]




>consensus_1957#0
CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCG
TTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAACGAACCGCTGTCGGAAA
GTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGC
GTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGG
CACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCC
TGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCT
CGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGC
GCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGG
GCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCG
ACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGGAG
GCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTTCA
AAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC

consensusID : consensus_1957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGC]

[+] EMBL BM603057             [CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGAAAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGC]




>consensus_1957#1
CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCGTTTCGGGGGAAGGAAAAGAAA
AGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGAAAGTGTTTGCACGATGCACCG
GAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACCGCGTGTAAAGCAGTATTTGGA
GGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGATGGCACGGGAGTTGCAGCAGCG
CTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCGCCTGCTGGTGGAGGAAGCGTA
CCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCCCTCGTCGGAGGTGGAGGAGGA
AGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCAGCGCAACCAGATGAGCAACAC
GCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGCGGGCGGAGGAGGACCGCCGGT
GCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCATCGACATTAGCAGCGACGAGGA
GGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGGAGGCTCCAAGAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1957#0      CCGCGGACGCGTGGGCGAGCATCCAGTACGGTTCCGAGGCGTGAAGGGTAAATGTAAGCG 60
consensus_1957#1      ---------------------CCGCGGACGCGTGGGCGGCGTGAAGGGTAAATGTAAGCG 39
                                            *  * ***  *  * ***********************

consensus_1957#0      TTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAA--CGAACCGCTGTCGGA 118
consensus_1957#1      TTTCGGGGGAAGGAAAAGAAAAGACTAAATCCACTGTAAAAAAAACGTACCGCTGTCGGA 99
                      *******************************************  ** ************

consensus_1957#0      AAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACC 178
consensus_1957#1      AAGTGTTTGCACGATGCACCGGAAAACGTCCCCGTTCCCGTACGATCCCATGATAATACC 159
                      ************************************************************

consensus_1957#0      GCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGAT 238
consensus_1957#1      GCGTGTAAAGCAGTATTTGGAGGAAAATGTGCACCAAACGTACGTGGACACCGGGGTGAT 219
                      ************************************************************

consensus_1957#0      GGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCG 298
consensus_1957#1      GGCACGGGAGTTGCAGCAGCGCTACCGCGAGTACAACCGCCGGAAGGCGAATCCGTTCCG 279
                      ************************************************************

consensus_1957#0      CCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCC 358
consensus_1957#1      CCTGCTGGTGGAGGAAGCGTACCGCACCGTGCTGCACAGCTACGGCCTCGACAGCAATCC 339
                      ************************************************************

consensus_1957#0      CTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCA 418
consensus_1957#1      CTCGTCGGAGGTGGAGGAGGAAGCCGGCTCCGATGTGGAGGTGATGGACGAGAGCGCTCA 399
                      ************************************************************

consensus_1957#0      GCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGC 478
consensus_1957#1      GCGCAACCAGATGAGCAACACGCTCACGAGCATGTACATGAACAATCGGGCCCGTGCGGC 459
                      ************************************************************

consensus_1957#0      GGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCAT 538
consensus_1957#1      GGGCGGAGGAGGACCGCCGGTGCCGGATCAGTCCGGGAGTGGGGCGGCCGGCGATGCCAT 519
                      ************************************************************

consensus_1957#0      CGACATTAGCAGCGACCAGGAGGAGGGCGAAAGAGGCGGTGGCGGTGGCGAAAGCGAAGG 598
consensus_1957#1      CGACATTAGCAGCGACGAGGAGGAGGGCGAAGGAGGCGGTGGCGGTGGCGAAAGCGAAGG 579
                      **************** ************** ****************************

consensus_1957#0      AGGCTCCAAGAAAGCAACAGAAGCGGTGTCCGAATCGGTTTCGGGAGGTGAAAATTTGTT 658
consensus_1957#1      AGGCTCCAAGAAAGC--------------------------------------------- 594
                      ***************                                             

consensus_1957#0      CAAAAGTTCGTTGCGGGTAATAGACATGTCACCGTGACGAAGCTTAC 705
consensus_1957#1      -----------------------------------------------