These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [AGAATCCCCCNCGGTTNTTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACTGTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCATGGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTGAAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGACGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTCTACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGGACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGTGGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATGAACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGCATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCGTACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGAGTAGTAACCGACNGGC] [+] EMBL AL694970 [AGAATCCCCCNCGGTTNTTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACTGTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCATGGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTGAAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGACGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTCTACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGGACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGTGGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATGAACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGCATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCGTACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGAGTAGTAACCGACNGGC] consensusID : consensus_1970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGGTGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGGTGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCGACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACTGTACGGACGATCAGCTCGGCAGCGCGCTCGAGATCTGGGAGGAGGCGAACCCGTTCATGGACGTGGACGACCTGCGCGTGCTGGTCAACCAGACCAAGCGCTCGTACAGCTGCCTGAAGCTGCTCGTGTTCTGGCAGAACATGAGCGAGGGGTTCGTCGGCACGGCGGACGATTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTCTACATCCTGTCCAAGGCGAACGTCGTGTCGGTCGAGCTGAAGATCTACGAGGAGGACATCGAGATTAGCTCGGACGTTTTCGAGTTCCCGAACAGCTCGGTCAGCACCGTGCACGTGGCGGACCTGTTCTTCGAGGAGGTGATCATGACGCCGCGCATGAACTACCGC] [+] EMBL BX616511 [CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGGTGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGGTGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCGACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACTGTACGGACGATCAGCTCGGCAGCGCGCTCGAGATCTGGGAGGAGGCGAACCCGTTCATGGACGTGGACGACCTGCGCGTGCTGGTCAACCAGACCAAGCGCTCGTACAGCTGCCTGAAGCTGCTCGTGTTCTGGCAGAACATGAGCGAGGGGTTCGTCGGCACGGCGGACGATTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTCTACATCCTGTCCAAGGCGAACGTCGTGTCGGTCGAGCTGAAGATCTACGAGGAGGACATCGAGATTAGCTCGGACGTTTTCGAGTTCCCGAACAGCTCGGTCAGCACCGTGCACGTGGCGGACCTGTTCTTCGAGGAGGTGATCATGACGCCGCGCATGAACTACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1970#0 ------------------------------------------------------------ consensus_1970#1 CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGG 60 consensus_1970#0 ------------------------------------------------------------ consensus_1970#1 TGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGG 120 consensus_1970#0 --------------------------------------------AGAATCCCCCNCGGTT 16 consensus_1970#1 TGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCG 180 ** * ** consensus_1970#0 N-TTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACT 75 consensus_1970#1 ACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACT 240 ** ** * *********** ****** ************** ************ consensus_1970#0 GTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCAT 135 consensus_1970#1 GTACGGACGATCAGCTCGG-CAGCGCGCTCGAGATCTGGGAGGAG-GCGAACCCGTTCAT 298 ******************* ************************* ************** consensus_1970#0 GGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTG 195 consensus_1970#1 GGACGTGGACGACCTGCGCG-TGCTGGTCAACCAGACCAAGC-GCTCGTACAGCTGCCTG 356 ******************** ********************* ***************** consensus_1970#0 AAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGA 255 consensus_1970#1 AAGCTGCTCGTGTTCT--GGCAGAACAT-GAGCGAGGGGTT-CGT-CGGCAC--GGCGGA 409 ************* ********** ************ *** ****** * **** consensus_1970#0 CGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTC 315 consensus_1970#1 CGA--TTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTC 467 *** * ********* ********************************** ******* consensus_1970#0 TACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGG 375 consensus_1970#1 TACATCCTGTCCAAGGCGAACGT-CGTGTCGGT-CGAGCTGAA-GATCTACGAG--GAGG 522 *********************** ********* ********* ******* **** consensus_1970#0 ACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGT 435 consensus_1970#1 ACATCGAGATTAGCTCGGACGTTTTCGAG--TTCCCGAACAGC-TCGGT-CAGCAC-CGT 577 ********** ** ******* * **** ***** ** ***** ***** *** consensus_1970#0 GGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATG 495 consensus_1970#1 G-CACGTG-GC---GGACCTGTTCTT---CGAGGAG-GTGAT-CATGACG-CCGCGCATG 626 * ****** ** * ****** * ******* ***** ******* ********* consensus_1970#0 AACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGC 555 consensus_1970#1 AACTACCGC--------------------------------------------------- 635 *** * consensus_1970#0 ATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCG 615 consensus_1970#1 ------------------------------------------------------------ consensus_1970#0 TACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGA 675 consensus_1970#1 ------------------------------------------------------------ consensus_1970#0 GTAGTAACCGACNGGC 691 consensus_1970#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||