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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence
[GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGACATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATACCGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCTAGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATACTATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGNGCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAANCAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACTATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAACCAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAACACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANACACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAAGACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGGCATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATTATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTTTACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAAAAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATTAACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAGCCGNAATACAACCGTGAGGAGGCACAATCGCCAC]
[+] EMBL AL694973 [GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGACATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATACCGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCTAGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATACTATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGNGCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAANCAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACTATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAACCAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAACACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANACACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAAGACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGGCATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATTATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTTTACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAAAAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATTAACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAGCCGNAATACAACCGTGAGGAGGCACAATCGCCAC]
consensusID : consensus_1971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[GCTGGTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGGCAGGCGGACATCAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGGGCAACGGTACGGATCCGTTCAATGCAACCGGCATGGTGGTGTGTTTGAGATCGGACTTTTGATTCCTAGCACTGGATGCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGTCGGTTGCTATCTTTCTCTTTCTCTTTTCAGTCCATTTATGTAGATTCTTCTGCAGCGATCGCTTTCAAAAATTGCTTGCTCTTCCACGTTCCTTGTTCAGTGCTACTTCAACCGCGCCGCGCCGTGCGATCTCTTTCTCTTCCTTTCACACCCGGTCCCGGACACTCTCACACACACACACACTGCGCTGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAATCACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGGCGACGGAATAACCTACTTTTGCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTTCACCGGCTGCCTCTCGCAACGGTAATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTGCACACGCGTGTACACCCGGCTGCTGCTGCTGCTGCTGTTGTTGCGACCGACCGGACGCGTGGGCGG]
[-] EMBL BM641396 [GCTGGTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGGCAGGCGGACATCAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGGGCAACGGTACGGATCCGTTCAATGCAACCGGCATGGTGGTGTGTTTGAGATCGGACTTTTGATTCCTAGCACTGGATGCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGTCGGTTGCTATCTTTCTCTTTCTCTTTTCAGTCCATTTATGTAGATTCTTCTGCAGCGATCGCTTTCAAAAATTGCTTGCTCTTCCACGTTCCTTGTTCAGTGCTACTTCAACCGCGCCGCGCCGTGCGATCTCTTTCTCTTCCTTTCACACCCGGTCCCGGACACTCTCACACACACACACACTGCGCTGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAATCACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGGCGACGGAATAACCTACTTTTGCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTTCACCGGCTGCCTCTCGCAACGGTAATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTGCACACGCGTGTACACCCGGCTGCTGCTGCTGCTGCTGTTGTTGCGACCGACCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1971#0 GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTT 60
consensus_1971#1 ----------------------------------------------GCTGGT-GATGTTT 13
**** *******
consensus_1971#0 GTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGA 120
consensus_1971#1 GTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAG-GCAGGCGGA 72
************************************************** *********
consensus_1971#0 CATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATAC 180
consensus_1971#1 CAT-CAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAG-GGCAAC-GGTACGGAT-C 128
*** ************************************* ****** ********* *
consensus_1971#0 CGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCT 240
consensus_1971#1 CGTTCAATGCAACCGGCATGGTGGTGTGTTT-GAGAT-CGGACTTTTGATT------CCT 180
************************ ****** ***** **** * * ***
consensus_1971#0 AGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATAC 300
consensus_1971#1 AGCACTGGAT-GCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGT-CGGTTGCTATCT 238
********** **************** ** ************* *** ******
consensus_1971#0 TATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGN 360
consensus_1971#1 T---TCT--------CTTTCTCTTTTCAGT-CCATTTATGTAGATTC----TTCTGCAGC 282
* *** ** * * * **** **** ********* * *****
consensus_1971#0 GCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAAN 420
consensus_1971#1 G-AT-CGCTTT---CAAAAATT--GCT-TGCT-CTTCCAC--------GTTCCTTGT--T 323
* ** *** ** ******* *** **** *** *** * * ***
consensus_1971#0 CAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACT 480
consensus_1971#1 CAGT--GCTA----CTTCAACCGCGCCGCGCCGTGCGATC----TCTTTCTCTTCCTTTC 373
*** **** * ****** * * ** **** * * ** * **
consensus_1971#0 ATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAAC 540
consensus_1971#1 ACACCCG------GTCCCGGACACT------------CTCACACACACACACACTGCG-C 414
* *** ********* ** ** *** *** ** * *
consensus_1971#0 CAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAA 600
consensus_1971#1 TGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAAT 474
* * **** ** * * * * * * * * **
consensus_1971#0 CACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANA 660
consensus_1971#1 CACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGG--CGACGGAATAACCTACTTTT 532
******* * ** ** * *** ** ** *
consensus_1971#0 CACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAA 720
consensus_1971#1 GCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTT 592
** * * **** * *** * * * * *
consensus_1971#0 GACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGG 780
consensus_1971#1 CACCGGCTGCCTCTCGCAACGGTA-ATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTG 651
** ** ** ** * * * * * * * * ** * * * * ** *
consensus_1971#0 CATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATT 840
consensus_1971#1 CACAC-GCGTGTACACCCGGCTGCTGCTGCT--GCTGCTGTTGTTGCGACCGACCGGACG 708
** ** * * ** * * * * * * ** *** *
consensus_1971#0 ATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTT 900
consensus_1971#1 CGTGGGCGG--------------------------------------------------- 717
* *
consensus_1971#0 TACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAA 960
consensus_1971#1 ------------------------------------------------------------
consensus_1971#0 AAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATT 1020
consensus_1971#1 ------------------------------------------------------------
consensus_1971#0 AACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAG 1080
consensus_1971#1 ------------------------------------------------------------
consensus_1971#0 CCGNAATACAACCGTGAGGAGGCACAATCGCCAC 1114
consensus_1971#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||