cluster # 1973

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Anopheles gambiae
cluster # 1973 cluster # 1973 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1973#0 length = 625 sequences # 1

consensus_1973#1 length = 556 sequences # 1

consensusID : consensus_1973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGGGATACGTTCGTTCGGTTTGTGTTGCGTTCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCGTTCGTTCTCTACGTGGTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAGACCAAAGTAATCAATTTCATTCCCTCCGCTTCACACAAGCGACCAGTAGCAGTAGCAGCAGCGGCGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCGACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTGCTGGTAGCAAAGAG]

[+] EMBL BM602755             [CCGGGATACGTTCGTTCGGTTTGTGTTGCGTTCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCGTTCGTTCTCTACGTGGTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAGACCAAAGTAATCAATTTCATTCCCTCCGCTTCACACAAGCGACCAGTAGCAGTAGCAGCAGCGGCGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCGACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTGCTGGTAGCAAAGAG]




>consensus_1973#0
CCGGGATACGTTCGTTCGGTTTGTGTTGCGTTCGGTTTTGAAAAAAAAAAAACAAGTTTC
GTTAGTTCGTTCGTTCTCTACGTGGTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAA
CAGACCAAAGTAATCAATTTCATTCCCTCCGCTTCACACAAGCGACCAGTAGCAGTAGCA
GCAGCGGCGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAG
TACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACC
CTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGAT
CTGCTTTTACAGCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTG
AGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGG
CACATCGTTGGCACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCC
GGCCCCTTCCGACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCT
GCGTGACGGTGCTGGTAGCAAAGAG

consensusID : consensus_1973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTGCCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACATATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATCGTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCAC]

[+] EMBL BX468532             [GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTGCCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACATATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATCGTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCAC]




>consensus_1973#1
GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTG
CCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACA
TATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATC
GTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGC
GAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAA
CGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGG
CCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACA
GCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGG
ACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGG
CACTAATATTTCCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1973#0      --------------------------------CCGGGATACGTTCGTTCGGTTTGTGTTG 28
consensus_1973#1      GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTG 60
                                                       *    **    **   * *    * **

consensus_1973#0      CGT--TCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCG----TTCGTTCTCTACG 82
consensus_1973#1      CCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACA 120
                      *       ** *   **   ****      * ** **    **    * * **  * ** 

consensus_1973#0      TG---GTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAG-ACCAAAGTAATCAAT 138
consensus_1973#1      TATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATC 180
                      *    * *  *     * **  *      * ** *    * **    ** *  ** **  

consensus_1973#0      TTCATTCCCTCCGCTTCA----CACA---AGCGACCAGTAGCAGTAGCAGCAGCGGCGGC 191
consensus_1973#1      GTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGC 240
                       **    * *** * **     ** *   * **  *    * ** ********* * ***

consensus_1973#0      GAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAA 251
consensus_1973#1      GAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAA 300
                      ************************************************************

consensus_1973#0      CGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGG 311
consensus_1973#1      CGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGG 360
                      ************************************************************

consensus_1973#0      CCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACA 371
consensus_1973#1      CCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACA 420
                      ************************************************************

consensus_1973#0      GCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGG 431
consensus_1973#1      GCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGG 480
                      *********** ************************************************

consensus_1973#0      ACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGG 491
consensus_1973#1      ACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGG 540
                      ************************************************************

consensus_1973#0      CACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCG 551
consensus_1973#1      CACTAATATTTCCCAC-------------------------------------------- 556
                      ****************                                            

consensus_1973#0      ACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTG 611
consensus_1973#1      ------------------------------------------------------------
                                                                                  

consensus_1973#0      CTGGTAGCAAAGAG 625
consensus_1973#1      --------------