These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAACTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAAACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAACCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAATTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAAAAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGCNTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNATTCTTCG] [+] EMBL BX469105 [GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAACTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAAACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAACCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAATTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAAAAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGCNTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNATTCTTCG] consensusID : consensus_1977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTAAACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACATACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACACTGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAGTATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGAAACAAACTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA] [+] EMBL AL932175 [ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTAAACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACATACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACACTGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAGTATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGAAACAAACTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1977#0 ------------------------------------------------------------ consensus_1977#1 ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTA 60 consensus_1977#0 ------------------------------------------------------------ consensus_1977#1 AACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACAT 120 consensus_1977#0 ------------------------------------------------------------ consensus_1977#1 ACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACAC 180 consensus_1977#0 ------------------------------------------------------------ consensus_1977#1 TGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAG 240 consensus_1977#0 -GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATA 59 consensus_1977#1 TATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATA 300 *** * ************************************** consensus_1977#0 GTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAA 119 consensus_1977#1 GTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAG-AAACAAA 359 **************************************************** ******* consensus_1977#0 CTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAG 179 consensus_1977#1 CTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAG 419 ***** ****************************************************** consensus_1977#0 AAA-ACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTA 238 consensus_1977#1 AAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTA 479 *** ******************************************************** consensus_1977#0 ACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAA 298 consensus_1977#1 ACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA------ 533 ****************************************************** consensus_1977#0 CCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAA 358 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 TTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAA 418 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 AAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGC 478 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 NTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNAT 538 consensus_1977#1 ------------------------------------------------------------ consensus_1977#0 TCTTCG 544 consensus_1977#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||