These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTGTGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAGAGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCGGACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGCGGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTCGCGACGGA] [+] EMBL BM576472 [CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTGTGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAGAGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCGGACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGCGGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTCGCGACGGA] consensusID : consensus_1982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CCGATTCTATTGCGCCTCTACCGCTACGCTGACTGCTGAACACACCTTTGCCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA] [+] EMBL BM622962 [CCGATTCTATTGCGCCTCTACCGCTACGCTGACTGCTGAACACACCTTTGCCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1982#0 CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTG 60 consensus_1982#1 ----------------------CCGATTCTATTGCGCCTCTACCGCTACGCTG-ACTGC- 36 * * ** ** ** ** * ** * ** consensus_1982#0 TGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGC 120 consensus_1982#1 TGAACACACCTTTG--CCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGC 94 *** * *** * * ****************************************** consensus_1982#0 CTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATG 180 consensus_1982#1 CTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATG 154 ************************************************************ consensus_1982#0 AGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTC 240 consensus_1982#1 AGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTC 214 ************************************************************ consensus_1982#0 AATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAG 300 consensus_1982#1 AATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAG 274 ************************************************************ consensus_1982#0 AAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGAC 360 consensus_1982#1 AAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGAC 334 ************************************************************ consensus_1982#0 TTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGC 420 consensus_1982#1 TTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGC 394 ************************************************************ consensus_1982#0 TGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAG 480 consensus_1982#1 TGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA- 453 *********************************************************** consensus_1982#0 AGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCG 540 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 GACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGC 600 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 GGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTC 660 consensus_1982#1 ------------------------------------------------------------ consensus_1982#0 GCGACGGA 668 consensus_1982#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||