These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG] [+] EMBL BM649703 [CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG] consensusID : consensus_1992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC] [+] EMBL BM635381 [CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1992#0 CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGC 60 consensus_1992#1 ------------------------------------------------------------ consensus_1992#0 TTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCG 120 consensus_1992#1 -----------------------------------CCGCTTGTTTTGTGCATCAATATCG 25 ********************** consensus_1992#0 TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 180 consensus_1992#1 TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 85 ************************************************************ consensus_1992#0 TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 240 consensus_1992#1 TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 145 ************************************************************ consensus_1992#0 AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 300 consensus_1992#1 AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 205 ************************************************************ consensus_1992#0 ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 360 consensus_1992#1 ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 265 ************************************************************ consensus_1992#0 AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 420 consensus_1992#1 AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 325 ************************************************************ consensus_1992#0 TGCCGTGTGTAATAGTTCGTGACACACTAATGTC-----AGTTCGAATGTTTAATCTAAG 475 consensus_1992#1 TGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGG 385 ******************************** * ***** * * * * consensus_1992#0 TTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTC--ATTATCAATGCTAAAGAAT 533 consensus_1992#1 TATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGA 445 * * * * * * * ** ** * ***** consensus_1992#0 GTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAA-TATTGATTGAATGAATAA 592 consensus_1992#1 TTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGA 505 **** *** * * * * * ** ** * * ** * * * ** * consensus_1992#0 CTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCG 652 consensus_1992#1 GTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCC---GCTTTGAGGCGGA 562 * * * *** * * *** * * ** * * ** * *** consensus_1992#0 GTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG 703 consensus_1992#1 GAATC-------AATCTACACCGTGGGAGCGTTTTCATTAGAAGC------ 600 * *** ** * * * ** ** * * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||