These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACATCAGCTGGCCACTATAATTTACCAACACCGGTGTACGCGTGTCATCTTTGCGATAATCATTTACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCCACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTACTGGCTGCGAATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGCTCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGATGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCTTAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGGCCGTTGAAGCGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNCCAGAGCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAATTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCGGCTAGTGGCACGTCC] [+] EMBL BX469635 [CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACATCAGCTGGCCACTATAATTTACCAACACCGGTGTACGCGTGTCATCTTTGCGATAATCATTTACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCCACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTACTGGCTGCGAATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGCTCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGATGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCTTAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGGCCGTTGAAGCGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNCCAGAGCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAATTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCGGCTAGTGGCACGTCC] consensusID : consensus_2001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [AATAGTGGTGAGGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCGAAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCCATGAAGTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCGTTGAAGCGGTAGAACCAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTGGCGCAGCGATTGCAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGTGCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGCCGAACCATTTCGGCACGGAATCGACCAAGCAGCCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACTTGAAATCGAGCGCAAAGCCGTCAATCAACGCCTAGGTGCGCGAGACCATCTAACGTTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCGGATTAACCGGCCGGGCGGCTTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC] [+] EMBL BX627421 [AATAGTGGTGAGGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCGAAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCCATGAAGTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCGTTGAAGCGGTAGAACCAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTGGCGCAGCGATTGCAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGTGCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGCCGAACCATTTCGGCACGGAATCGACCAAGCAGCCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACTTGAAATCGAGCGCAAAGCCGTCAATCAACGCCTAGGTGCGCGAGACCATCTAACGTTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCGGATTAACCGGCCGGGCGGCTTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2001#0 CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACAT-CA 59 consensus_2001#1 ---------AATAGTGGTGAGG-CTAACGAGGGT-ACTGGGCCGACTGGAAGCAAAGGCA 49 *** * **** ****** ** *** ** ***** * ** consensus_2001#0 GCTGGCCACTATAATTTACCAACACCGGTGTACGCG-TGTCATCTTTGCGATAATCATTT 118 consensus_2001#1 AAAGGAAACAGCAAA----CATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCG 105 ** ** ** ** *** * * * *** ** * * **** * * consensus_2001#0 ACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCC 178 consensus_2001#1 AAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCC 165 * * * * * * * ** ** * * * **** ** consensus_2001#0 ACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTAC 238 consensus_2001#1 ATGAA-GTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCG-TTGAAGCGGTAGAAC 223 * * * * ** * * *** * *** * ** * ** *** * * * ** consensus_2001#0 TGGCTGCGA-ATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGC 297 consensus_2001#1 CAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTG-GC 282 * * *** * ** * *** * * ** * * * * * * ** consensus_2001#0 TCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGC 357 consensus_2001#1 GCAGCGATTG-CAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGT 341 * * * * *** * *** * * ** ** * * * * * * * consensus_2001#0 AAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGA 417 consensus_2001#1 GCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGC---CGAACCATTTCGGCAC 398 * * ** ** * * * * *** * * * *** * *** consensus_2001#0 TGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCT 477 consensus_2001#1 GGAATCGA---CCAAGCAG-CCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACT 454 *** *** **** * * ** * * * * * * ** * ** consensus_2001#0 TAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGG 537 consensus_2001#1 TGAAATCGAGCGCAAAGCCGTCAATCA-----ACGCCTAGGTGCGCGAGACCATCTAACG 509 * * *** * * * *** ** **** **** * ** * * consensus_2001#0 C-CGTTGAAG--CGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNC 594 consensus_2001#1 TTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCG-GATTAACCGGCCGGGCGGC 568 ***** ** * ******** ** * * ** *** * * ** * * consensus_2001#0 CAGA--GCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAA 652 consensus_2001#1 TTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC------------------------- 603 * * * ** * * *** * * * * consensus_2001#0 TTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCG 712 consensus_2001#1 ------------------------------------------------------------ consensus_2001#0 GCTAGTGGCACGTCC 727 consensus_2001#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||