These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 834 fasta sequence [AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN] [+] EMBL AL695149 [AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN] consensusID : consensus_2003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT] [+] EMBL AL933423 [CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2003#0 --AGATCCCGC-AGGTTAACGCTAATTGATATNGGTCNCAATCTTG-TATTGAGCATC-G 55 consensus_2003#1 CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAG 60 ***** * ************* ****** **** **** ** *********** * consensus_2003#0 GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGG-TA 114 consensus_2003#1 GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTA 120 ********************************************************* ** consensus_2003#0 GGTACGTATGACTACC-GTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCAT 173 consensus_2003#1 CGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAA--ATTCTACTCAG 178 ******* **** * **** * *** * ******** * * * * * *** consensus_2003#0 TACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATG 233 consensus_2003#1 CATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACC 238 * * ** * *** ** * * **** * * * ** consensus_2003#0 GCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGG 293 consensus_2003#1 GCTATTA--CACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGG 296 ** * ** * * * * * * * * *** ** * ** consensus_2003#0 ACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGG---TCGCCTNCTCGGGACTNA 350 consensus_2003#1 A--GGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACT 354 * ** * ** * * * ** * **** ** *** * * ** * * * consensus_2003#0 ACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATA 410 consensus_2003#1 AGTACNCCAAAGAGCCANACGAGTAG---GGAGTTTTCG-GTTGACCTCTCATTGNGACA 410 * * *** * * * * * * * ** *** * * * * consensus_2003#0 CTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGC 470 consensus_2003#1 TTACCCCTGCC-ATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAAC-ACGGC 468 ******* ** ** * * ** * * * * * * ** * ** ** consensus_2003#0 CTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCN 530 consensus_2003#1 CTTG---------AACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAG 519 **** * * * *** * * * ** * * * consensus_2003#0 -CACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAA 589 consensus_2003#1 ACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCC 579 * * * ** * * ** * ** * * **** ** consensus_2003#0 ATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANAC 649 consensus_2003#1 GTAACTTCCGCNAACACCGGTAAC--TATGGGGTATGGACCCAAAGGTTA--CGATAAGC 635 *** * * * * * ** *** * ** ** * * * * * * consensus_2003#0 CGCAACTATNAAACCA-CCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAA 708 consensus_2003#1 CGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAG 695 *** * * ** ** * * * * * ** * ** consensus_2003#0 CCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAA 768 consensus_2003#1 CTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATA--TATC--- 750 * ** * * * ** * * ** **** * * * ** ** * consensus_2003#0 CCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTC 828 consensus_2003#1 ----TTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT---------------------- 784 * * ** ** ** * * ** *** consensus_2003#0 NTNGNN 834 consensus_2003#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||