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Anopheles gambiae
cluster # 2003 cluster # 2003       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2003#0 length = 834 sequences # 1  
consensus_2003#1 length = 784 sequences # 1  

consensusID : consensus_2003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 834
fasta sequence
                              [AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN]

[+] EMBL AL695149             [AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN]


>consensus_2003#0 AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCT AAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACG TATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACT ACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTA GTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGC CATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAA AAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTAT GGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCC CTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCT TCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCC TCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNA AACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTAT ACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAG CAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN



consensusID : consensus_2003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence
                              [CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT]

[+] EMBL AL933423             [CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT]


>consensus_2003#1 CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAG GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTA CGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCA TTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGC TATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGT GTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACN CCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGC CATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGT TGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNA TCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGT AACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAA AGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGG GCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAA TCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2003#0      --AGATCCCGC-AGGTTAACGCTAATTGATATNGGTCNCAATCTTG-TATTGAGCATC-G 55
consensus_2003#1      CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAG 60
                          ***** * ************* ****** **** ****  ** *********** *

consensus_2003#0      GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGG-TA 114
consensus_2003#1      GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTA 120
                      ********************************************************* **

consensus_2003#0      GGTACGTATGACTACC-GTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCAT 173
consensus_2003#1      CGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAA--ATTCTACTCAG 178
                       *******    **** * **** * *** *  ******** * * *  * *    *** 

consensus_2003#0      TACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATG 233
consensus_2003#1      CATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACC 238
                       *  * **     *      ***     **   *   * ****    * *    * **  

consensus_2003#0      GCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGG 293
consensus_2003#1      GCTATTA--CACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGG 296
                      ** * **         *      * * *  *    *   *   *   *** ** *   **

consensus_2003#0      ACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGG---TCGCCTNCTCGGGACTNA 350
consensus_2003#1      A--GGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACT 354
                      *  **   *   ** *  * * ** * ****  ** ***   * *    ** * * *   

consensus_2003#0      ACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATA 410
consensus_2003#1      AGTACNCCAAAGAGCCANACGAGTAG---GGAGTTTTCG-GTTGACCTCTCATTGNGACA 410
                      *     * *** * * * *  * *       * ** ***     *   *        * *

consensus_2003#0      CTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGC 470
consensus_2003#1      TTACCCCTGCC-ATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAAC-ACGGC 468
                       *******    **    ** * *   ** * *       * * * * **   * ** **

consensus_2003#0      CTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCN 530
consensus_2003#1      CTTG---------AACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAG 519
                      ****         *   *   *   *** *          * *   ** *  * *     

consensus_2003#0      -CACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAA 589
consensus_2003#1      ACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCC 579
                       * *    * ** * *  ** *    **  *       *        ****   **    

consensus_2003#0      ATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANAC 649
consensus_2003#1      GTAACTTCCGCNAACACCGGTAAC--TATGGGGTATGGACCCAAAGGTTA--CGATAAGC 635
                       ***  * * *    *  *   **  ***     * ** ** *      *  * * *  *

consensus_2003#0      CGCAACTATNAAACCA-CCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAA 708
consensus_2003#1      CGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAG 695
                      ***       *    * **   ** *     * *  * *     ** *         ** 

consensus_2003#0      CCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAA 768
consensus_2003#1      CTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATA--TATC--- 750
                      *  ** *  * * **    *     *  **  **** *    * *   **   ** *   

consensus_2003#0      CCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTC 828
consensus_2003#1      ----TTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT---------------------- 784
                          *  *  ** ** **     *   *  **  ***                       

consensus_2003#0      NTNGNN 834
consensus_2003#1      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)