These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGCCCACGCGTCCGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGCCACAGCCATAATGTGCACGAGTACAAATCGGAGGATGACAGCAGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCATGAAGTACAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAATGGCGACAAGAGCAAGGGGCGCAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAGCTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCAATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCCAGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCAATCCTAACAGCTCTGGCGATGGTGAGCTGGTCGACACGAAACCTCCCGCGTCGCAACTGCAGCAGCAGCAGC] [+] EMBL BM628442 [CCGCCCACGCGTCCGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGCCACAGCCATAATGTGCACGAGTACAAATCGGAGGATGACAGCAGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCATGAAGTACAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAATGGCGACAAGAGCAAGGGGCGCAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAGCTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCAATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCCAGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCAATCCTAACAGCTCTGGCGATGGTGAGCTGGTCGACACGAAACCTCCCGCGTCGCAACTGCAGCAGCAGCAGC] consensusID : consensus_2008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCATGAACGACGTCAAGTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGGTGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCCGTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGCGCCGGGAGGAAAAGAACGAACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACATTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACGGCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATCGGACGTAGAACCGAAAGTGGAAATGGTCGAGTATCTGGACAGTGAGGCGGGCACGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCCATAATGTGCACGAGTACAA] [+] EMBL BM602262 [CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCATGAACGACGTCAAGTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGGTGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCCGTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGCGCCGGGAGGAAAAGAACGAACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACATTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACGGCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATCGGACGTAGAACCGAAAGTGGAAATGGTCGAGTATCTGGACAGTGAGGCGGGCACGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCCATAATGTGCACGAGTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2008#0 CCGCCCACGCGTCCG-----CACCAATCGCCAACGTACTGCAGCAT--GGAACCGTACGC 53 consensus_2008#1 CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCAT 60 ****** * * * ** ** * **** ** * * consensus_2008#0 GGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCA-ATCAATAATGTCGCTG 112 consensus_2008#1 GAACGACGTCAA-GTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGG 119 * * * *** * ** *** ****** * * * ** * * ** * consensus_2008#0 GTTTCAGT-CAAACCGGCGCCGCGACCGTTTC--CGGCGCAGCGGGACCTAATCAACCCG 169 consensus_2008#1 TGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCC 179 ** * *** * * * *** * * ** * * *** * consensus_2008#0 GTGGCTCTACCGGCCACAGCCATAATGTGC--ACGAGTACAAATCGG-AGGATG-ACAGC 225 consensus_2008#1 GTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGC 239 **** * * * * * ** ** * * * * * * **** * ** ** consensus_2008#0 AGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCA-TGAAGTA 284 consensus_2008#1 GCCGGGAGGAAAAGAACG---AACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACA 296 *** * * * ** **** * * ** * **** * * consensus_2008#0 CAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAA 344 consensus_2008#1 TTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACG 356 * * * * * * * *** * * ***** *** consensus_2008#0 TGGCGACAAGAGCAAGGGGCG-CAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAG 403 consensus_2008#1 GCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATC---GGACG-TAGAA 412 *** * ** * **** * ** *** * * * ** ** ***** * * consensus_2008#0 CTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCA 463 consensus_2008#1 CCGAAAGT--GGAAATGGTCGAGTATCTGGACAGTGAGGCGGGC-ACGCACCAATCGCCA 469 * * ** * * * ** ** * ** * * * ** ** * *** consensus_2008#0 ATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCC 523 consensus_2008#1 ACGTACTGCAGC--ATGGAACCG-TACGCGGATAAAA------CCAATGCCCGCACTGCC 520 * * * ***** *** * * *** * * * ****** ***** consensus_2008#0 AGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCA 583 consensus_2008#1 ATGGGC----CA--TCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGG--CG 572 * ** ** ** * * * * * * * * ** * * * ** * * consensus_2008#0 ATCCTAACAGCTCTGGCGATG-GTGAGCTGGTCGACACGAAACCTCCCGCGT-CGCAACT 641 consensus_2008#1 CCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCC 632 * * * ** **** * * ** ** ** ** ** *** ** * ** * consensus_2008#0 GCAGCA-GCAGCAGC---- 655 consensus_2008#1 ATAATGTGCACGAGTACAA 651 * *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||