These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1497 fasta sequence [CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTTACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGGAAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATTATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGCAACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAATTAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATACCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTTTTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATTTTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAAAGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTCCACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCATTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGCTTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNTTAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACGAAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTCCCAAAGGCGAAGCTGAGCGCAATGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTTTTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGCCTTGGTTGGAACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAACAACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAAAGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAATTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACACGAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACCTCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN] [+] EMBL BX468634 [CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTTACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGGAAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATTATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGCAACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAATTAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATACCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTTTTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATTTTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAAAGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTCCACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCATTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGCTTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNTTAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACGAAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTCCCAAAGGCGAAGCTGAGCGCAATGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTTTTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGCCTTGGTTGGAACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAACAACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAAAGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAATTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACACGAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACCTCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN] consensusID : consensus_2018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTCAAGATGTTCATCAAGACGGCCTGCTGCTTCCCGGAGCGCATCACCAAGCTGGACTACGACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAATCTTATGATCTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTATGCCTTACGCGAAGTTATGCGATACATGACATGATTACCACCGGCACCGGCAAATGCCAGCCCTTCGGCCAGTTTTGTGAGCCTGCCTACCACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTGCAGTTACAAACGTTCAGAGAAGAGATGTG] [+] EMBL BM601979 [CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTCAAGATGTTCATCAAGACGGCCTGCTGCTTCCCGGAGCGCATCACCAAGCTGGACTACGACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAATCTTATGATCTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTATGCCTTACGCGAAGTTATGCGATACATGACATGATTACCACCGGCACCGGCAAATGCCAGCCCTTCGGCCAGTTTTGTGAGCCTGCCTACCACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTGCAGTTACAAACGTTCAGAGAAGAGATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2018#0 CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTT 60 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACA 120 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 GAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTT 180 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 ACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGG 240 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 AAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATT 300 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 ATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGC 360 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 AACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAAT 420 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATA 480 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 CCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTT 540 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATT 600 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAA 660 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 AGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTC 720 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 CACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCA 780 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGC 840 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNT 900 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 TAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACG 960 consensus_2018#1 ------------------------------------------------------------ consensus_2018#0 AAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTC-CCAAAGGCGAAGCTGAGCGCAA 1019 consensus_2018#1 ------CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTC 54 ** ** ** * ** * ** * * *** ** * * *** consensus_2018#0 TGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTT 1079 consensus_2018#1 AAGATGTTCA--TCAAGACGGCCTGCTGCTTCCCGGAGCGCATC-ACCAAGCTGGACTAC 111 * ** * * * * * *** ******* ** * * * consensus_2018#0 TTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGC 1139 consensus_2018#1 GACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAA----TCTTATGAT 167 ** * * * * *** * ** * * * * ** ** ** consensus_2018#0 CTTGGTTGGA-ACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAAC 1198 consensus_2018#1 CTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTAT--GCCTTACGCGAAGTTATGCGATAC 225 ***** * *** ** ** ** ** * *** *** * ** consensus_2018#0 AACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAA 1258 consensus_2018#1 A-TGACATGATTACCACCGGC-------ACCGGCAAATGCCAGCCCTTCGGC-----CAG 272 * ***** ** ** ***** ****** ** * ** ** consensus_2018#0 AGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAA 1318 consensus_2018#1 TTTTGTGAGCCTGCCTACCACAG--TGAAGGAGCACGAATGATTGGGCGGGAATTGCGTT 330 * ** ** ** * *** * * ** * ** consensus_2018#0 TTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACAC 1378 consensus_2018#1 TTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAG 390 **** ** * * * ** ** * * *** * * * * * consensus_2018#0 GAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACC 1438 consensus_2018#1 AGAACAGAGAGA-ACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCT 449 * * * * ** * * * * * * * *** * ** * ** * * consensus_2018#0 TCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN 1497 consensus_2018#1 GCAG--TTACAAACGTTCAGAGAAGAGATGTG--------------------------- 479 * ** ** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||