These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCTTTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATGTCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCACACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGCAGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAATAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGAGCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGATAACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTCAACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATAAACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGTTCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTACCGACTTTAATCAGCGCC] [+] EMBL AL695315 [ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCTTTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATGTCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCACACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGCAGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAATAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGAGCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGATAACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTCAACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATAAACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGTTCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTACCGACTTTAATCAGCGCC] consensusID : consensus_2027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [ATGTGTGTTATCATGTGAAACATTGTGCGTTTACACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGCAGGTGTGCTGTTTCATGAATGTGAATGCGACACCGGTGCGAAATGGACACACGCACAATATCAATGAACTCGGCATTCTCTCACAGGTGTTTCTCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTGTGTGCGAATGGTAAACTTTGTGCGTGCATTGAGCTGGCGCGCAGTTGTTCTTTTCAATGGGCGTTTTGTTTCATGAGCGCGGCAGTATTCTGTTCTCGATTTTGAAGGGAAGACGCTTACTCGCGTACTCGTTGATAGTTTTTATCCATGCGATGTTTTCGCTGCTCGACAACGATGTAATTCATCGCGTATAGAAGTAGAA] [+] EMBL BX627260 [ATGTGTGTTATCATGTGAAACATTGTGCGTTTACACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGCAGGTGTGCTGTTTCATGAATGTGAATGCGACACCGGTGCGAAATGGACACACGCACAATATCAATGAACTCGGCATTCTCTCACAGGTGTTTCTCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTGTGTGCGAATGGTAAACTTTGTGCGTGCATTGAGCTGGCGCGCAGTTGTTCTTTTCAATGGGCGTTTTGTTTCATGAGCGCGGCAGTATTCTGTTCTCGATTTTGAAGGGAAGACGCTTACTCGCGTACTCGTTGATAGTTTTTATCCATGCGATGTTTTCGCTGCTCGACAACGATGTAATTCATCGCGTATAGAAGTAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2027#0 ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCT 60 consensus_2027#1 ------------------------------------------------------------ consensus_2027#0 TTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATG 120 consensus_2027#1 ------------------------------------------------------------ consensus_2027#0 TCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCA 180 consensus_2027#1 ---------------------------ATGTGTGTTATCATGTGAAACATTGTGCGTTTA 33 ********************** ******* * consensus_2027#0 CACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGC 240 consensus_2027#1 CACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGC 93 ******** **** *********************** **************** ***** consensus_2027#0 AGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAA 300 consensus_2027#1 AGGTGTGCTGTTTCATGAATGTGAATGCG-ACACCGGTGCGAAA-TGGACACACGCACAA 151 ****************** ********** ************ * **** ** ******* consensus_2027#0 TAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCC 360 consensus_2027#1 TATCAATGAACTCGGCATTCTCTCACAGGTGTT-TCTCCAGTGCACGCCATTGAAAGGCC 210 ** * *************** ************ ** *********************** consensus_2027#0 TTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGA 420 consensus_2027#1 TTCGTGCATCTCTGCGTTGCACGTT-GTGTGCGAATGGTAAACTTT-GTGCGTGCATTGA 268 ************************* ******* **** ***** * *** ********* consensus_2027#0 GCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGAT 480 consensus_2027#1 GCTGGCGCGCAGT-TGTTCTTTT-CAATGGGCGTT--TTGTTT-CATGAGCGCGGCAG-T 322 ** ******** ****** ** ******* * ** * ************** * consensus_2027#0 AACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTC 540 consensus_2027#1 ATTCTGTTCTCG---ATTTTGAA-GGGAAGACGC-TTACTCGCGTACTCGTT-GATAGTT 376 * **** ** **** *** *** ** * *** * ***** * ****** consensus_2027#0 AACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATA 600 consensus_2027#1 --TTTATCCATGCGATGT--TTTCGCT-GCTCGAC-AACGAT-GTAATTCATCGCGTATA 429 ******* ** * * * *** ******* ****** ** ************** consensus_2027#0 AACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGT 660 consensus_2027#1 GA-AGTAGAA-------------------------------------------------- 438 * ** **** consensus_2027#0 TCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTA 720 consensus_2027#1 ------------------------------------------------------------ consensus_2027#0 CCGACTTTAATCAGCGCC 738 consensus_2027#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||