|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1294 fasta sequence
[GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCGTTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANAGCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGCAGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAGCCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACACCCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGGCTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACANCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACACANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGTTTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAACAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCANACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCTTTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGATGGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGACCAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATCGCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCCAACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAACCAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGGACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAACGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACCCCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAACCAAGCGNCAATTGGACNCCNATGGGAACACCCC]
[+] EMBL AL695336 [GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCGTTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANAGCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGCAGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAGCCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACACCCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGGCTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACANCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACACANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGTTTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAACAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCANACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCTTTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGATGGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGACCAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATCGCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCCAACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAACCAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGGACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAACGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACCCCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAACCAAGCGNCAATTGGACNCCNATGGGAACACCCC]
consensusID : consensus_2031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[CCGGGAAGCTCCAGCAAAGACGAGCTATGGTGCCGTGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTGTGGTAGAGCGTTGAGTGCAGTGGCAGATAGTGTGAGAGAGATCACCGGCAAAGCGAGCAGTGAAGGGGAAAACAGAGTGAACAGAGGGAGAGAAAAAAAACATACCGGGAAGTGAGAATACACACAGGA]
[+] EMBL BM628568 [CCGGGAAGCTCCAGCAAAGACGAGCTATGGTGCCGTGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTGTGGTAGAGCGTTGAGTGCAGTGGCAGATAGTGTGAGAGAGATCACCGGCAAAGCGAGCAGTGAAGGGGAAAACAGAGTGAACAGAGGGAGAGAAAAAAAACATACCGGGAAGTGAGAATACACACAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2031#0 GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCG 60
consensus_2031#1 ------------------------CCGGGAAGCTCCAGCAAAGACGAGCTATG-GTGCCG 35
*** ************** ******* ******
consensus_2031#0 TTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANA 120
consensus_2031#1 TGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTG-TGGTAGA 94
* ********************************* *************** ***** *
consensus_2031#0 GCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGC 180
consensus_2031#1 GCGTTGAG-TGCAGTGGCAGATAGTGTGAG----AGAGATCACCGG-----CAAAGCGAG 144
******** ********************* ** **** * ** ***
consensus_2031#0 AGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAG 240
consensus_2031#1 CAGTGAAGGGGAAAACAGAGTGAACAGAGGG--AGAGAAAAAAAACATACCGGGAAGTGA 202
* * * * * * * ** * * ** * * ** * * * **
consensus_2031#0 CCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACAC 300
consensus_2031#1 GAATACACACAGGA---------------------------------------------- 216
* ******* *
consensus_2031#0 CCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGG 360
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACA 420
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 NCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACAC 480
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 ANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGT 540
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 TTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAA 600
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCA 660
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 NACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCT 720
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 TTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGAT 780
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 GGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGAC 840
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATC 900
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 GCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCC 960
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 AACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAAC 1020
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGG 1080
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 ACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAA 1140
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACC 1200
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAA 1260
consensus_2031#1 ------------------------------------------------------------
consensus_2031#0 CCAAGCGNCAATTGGACNCCNATGGGAACACCCC 1294
consensus_2031#1 ----------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||