These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1294 fasta sequence [GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCGTTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANAGCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGCAGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAGCCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACACCCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGGCTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACANCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACACANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGTTTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAACAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCANACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCTTTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGATGGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGACCAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATCGCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCCAACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAACCAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGGACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAACGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACCCCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAACCAAGCGNCAATTGGACNCCNATGGGAACACCCC] [+] EMBL AL695336 [GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCGTTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANAGCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGCAGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAGCCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACACCCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGGCTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACANCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACACANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGTTTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAACAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCANACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCTTTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGATGGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGACCAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATCGCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCCAACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAACCAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGGACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAACGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACCCCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAACCAAGCGNCAATTGGACNCCNATGGGAACACCCC] consensusID : consensus_2031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [CCGGGAAGCTCCAGCAAAGACGAGCTATGGTGCCGTGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTGTGGTAGAGCGTTGAGTGCAGTGGCAGATAGTGTGAGAGAGATCACCGGCAAAGCGAGCAGTGAAGGGGAAAACAGAGTGAACAGAGGGAGAGAAAAAAAACATACCGGGAAGTGAGAATACACACAGGA] [+] EMBL BM628568 [CCGGGAAGCTCCAGCAAAGACGAGCTATGGTGCCGTGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTGTGGTAGAGCGTTGAGTGCAGTGGCAGATAGTGTGAGAGAGATCACCGGCAAAGCGAGCAGTGAAGGGGAAAACAGAGTGAACAGAGGGAGAGAAAAAAAACATACCGGGAAGTGAGAATACACACAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2031#0 GCTCGAGCAGAATCCCGCGGTTTATTTGGANGCTCCAGCAAAGACNAGCTATGTGTGCCG 60 consensus_2031#1 ------------------------CCGGGAAGCTCCAGCAAAGACGAGCTATG-GTGCCG 35 *** ************** ******* ****** consensus_2031#0 TTGTGCCTTTCAACCCAGTGACGACTACTGCTTCCTGTCTCGGATAGTGCTNGTGGTANA 120 consensus_2031#1 TGGTGCCTTTCAACCCAGTGACGACTACTGCTTCCGGTCTCGGATAGTGCTG-TGGTAGA 94 * ********************************* *************** ***** * consensus_2031#0 GCGTTGAGATGCAGTGGCAGATAGTGTGAGCAGCAGCATCCACCTGTGCCACACAGCNGC 180 consensus_2031#1 GCGTTGAG-TGCAGTGGCAGATAGTGTGAG----AGAGATCACCGG-----CAAAGCGAG 144 ******** ********************* ** **** * ** *** consensus_2031#0 AGCTCAGTTGCACAGTGTGGCAACCACTGTGTCAGTTGTCACACCCACAGTGTGCAGCAG 240 consensus_2031#1 CAGTGAAGGGGAAAACAGAGTGAACAGAGGG--AGAGAAAAAAAACATACCGGGAAGTGA 202 * * * * * * * ** * * ** * * ** * * * ** consensus_2031#0 CCACACACACAACACACACACNCATNCACCTGGGCACAGTTGCAGGCACATCACCAACAC 300 consensus_2031#1 GAATACACACAGGA---------------------------------------------- 216 * ******* * consensus_2031#0 CCAAGGGCAGTGTTGCATCCGGCAGGCTTTCAACAGTTTGCCACTAGTATATTTATAAGG 360 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CTCGGCCACACCGTTCNATTCGGGCATTCCCCANGCACCACAAGGCTTGGTTCATACACA 420 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 NCCGACACAAAGAAGAGGTTATTCCCATTNTAGGATATAGGNANGGCCCATTACAAACAC 480 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 ANTATATATGCCCCAATTTCCCTTTTCCCTGGANGCAAAGAGCNCCAAAAACANCATGGT 540 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 TTTGGCAAAGCCATTACAAAAAGNNTTATACTCTGGCAANGCTTGNCGAGNCCTNGCAAA 600 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CAACAGGTAGGGCNTTTTNTCAAAAAAGCGCTTACATAAACCANAAACAATTTTTTCCCA 660 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 NACAGAACAAACTCTTCANAACNACGCCTTCCGCANCCAACAAAGCTCCACAAAGCGCCT 720 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 TTNCTAACCCCTAGGTCGGCCAAGGATGGTAACCTAGGTCANCNCNAAAACACAAAGGAT 780 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 GGTGCCCCTGTGCACAGCCCCATAGGGNACNCCATCAGACACCCTCAANTGGCTCAAGAC 840 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CAACTATGGNGGGTTACAGGCAACCCCCGGGGTACTNATGGGTATATGNCGNACCGCATC 900 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 GCCCAATTTANTCCGTTTGGGACCCATTNAACANAGGCAAAAGGATTAAACAGACANCCC 960 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 AACGGCAAACGGACGCCNTACTCCCACACCCAAGAAAACCACAGGATGGGCAGGGACAAC 1020 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CAGACAAACCGACANGACNACCGGACAGCTTCCCCANNAACACANGAGACTTGGAAACGG 1080 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 ACCCATACTATTCCCACGAGACCGGAAAGCCAGCGCCACACNGCCCCGTTCCCGNNAGAA 1140 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CGAACACAANACAGNGAAAGCCGGGCAACCGCCCCGGGACGAAGCGCCCCCTTGGNTACC 1200 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CCCGGGCGACCACANAATTNCCGNGGCATANTGGTCACCCCCCGGGGGAGANTNCCCCAA 1260 consensus_2031#1 ------------------------------------------------------------ consensus_2031#0 CCAAGCGNCAATTGGACNCCNATGGGAACACCCC 1294 consensus_2031#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||