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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[CATCCGAACCTGTCCGATAGACACTGCTGGTTAGTGTTGGCTTCTAGTGCAATGTGTTTTGTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTTTAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGATGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGAAATCGATTTTTCCTGCCAACCCAGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCACAAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAATCGAAGCGATGCTACCGCCCGAAATGAAGACTATGGCAAAGGAAGCGTTAACCCATTGTAAAGACACACAAACCTCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTGCCGCCGATTTTACCCCCGACACCTTCATGTTCCCATGATGAATGAACCCGATAATTGATGATCTGCGCCCAAAGGAATATATAATGAGTGCTATCTACTGTTGAAACTATCCGTATCCTCCCCTTATTAGAGAATGTTTCGATGAAGATGTTTACTGTTTGTGTGTTAGTTTGTGCACCAATCACGGTTTGGAATTACTTTATAGGTAGTAGATTAAACAATAAAGCTTTATTCATAAAAAAAAAAAAAAAA]
[+] EMBL AF437887 [CATCCGAACCTGTCCGATAGACACTGCTGGTTAGTGTTGGCTTCTAGTGCAATGTGTTTTGTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTTTAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGATGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGAAATCGATTTTTCCTGCCAACCCAGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCACAAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAATCGAAGCGATGCTACCGCCCGAAATGAAGACTATGGCAAAGGAAGCGTTAACCCATTGTAAAGACACACAAACCTCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTGCCGCCGATTTTACCCCCGACACCTTCATGTTCCCATGATGAATGAACCCGATAATTGATGATCTGCGCCCAAAGGAATATATAATGAGTGCTATCTACTGTTGAAACTATCCGTATCCTCCCCTTATTAGAGAATGTTTCGATGAAGATGTTTACTGTTTGTGTGTTAGTTTGTGCACCAATCACGGTTTGGAATTACTTTATAGGTAGTAGATTAAACAATAAAGCTTTATTCATAAAAAAAAAAAAAAAA]
consensusID : consensus_2035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CAGAATCCCGAGGTTTTAGTGTTGGCTCCTATGCATGTGTTTTGTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTTTAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGATGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGAAATCGATTTTTCCTGGCAACCAGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCACAAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAATCGAAGCGATGCTACCGCCGAAATGAAGACTATGGCAAAGGAAGCGTTAAACCATTGTAAAGACACACAAACTCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTGCCGCGATTTTAACCCCGACACTTCATGTTTCCCATGATGAATGAACCCGACTAATTGATGATCTTGGCCCAAAGGGAATATATAATTGAGTGCGTATCCTAACTTGGTTGAAAATATACGTAATCCTTCCCTTTATTAGCAGAATGGTTTCG]
[+] EMBL AL695357 [CAGAATCCCGAGGTTTTAGTGTTGGCTCCTATGCATGTGTTTTGTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTTTAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGATGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGAAATCGATTTTTCCTGGCAACCAGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCACAAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAATCGAAGCGATGCTACCGCCGAAATGAAGACTATGGCAAAGGAAGCGTTAAACCATTGTAAAGACACACAAACTCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTGCCGCGATTTTAACCCCGACACTTCATGTTTCCCATGATGAATGAACCCGACTAATTGATGATCTTGGCCCAAAGGGAATATATAATTGAGTGCGTATCCTAACTTGGTTGAAAATATACGTAATCCTTCCCTTTATTAGCAGAATGGTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2035#0 CATCCGAACCTGTCCGATAGACACTGCTGGTTAGTGTTGGCTTCTAGTGCAATGTGTTTT 60
consensus_2035#1 ---------------CAGAATCCCGAGGTTTTAGTGTTGGCTCCTA-TGCA-TGTGTTTT 43
* * * * ************ *** **** ********
consensus_2035#0 GTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTT 120
consensus_2035#1 GTAGCATGAGCGTATCGGTGCTGGTATCGTCTTTAGTGGTGTTATTTTGCGTACAGTGTT 103
************************************************************
consensus_2035#0 TAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGA 180
consensus_2035#1 TAATCGAACATATTGATGGAGCAATGACCATGAAACAGCTAACCAACTCGATGGATATGA 163
************************************************************
consensus_2035#0 TGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGA 240
consensus_2035#1 TGCGGCAAGCGTGTGCTCCAAAATTCAAAGTTGAGGAAGCGGAGCTACACGGTTTAAGGA 223
************************************************************
consensus_2035#0 AATCGATTTTTCCTGCCAACCCAGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCAC 300
consensus_2035#1 AATCGATTTTTCCTGGCAACC-AGATAAAGAGCTCAAGTGTTATGCTATGTGTATTGCAC 282
*************** ***** **************************************
consensus_2035#0 AAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAA 360
consensus_2035#1 AAATGGCAGGAACTATGACGAAGAAGGGTGAAATCAGCTTTTCGAAAACGATGGCTCAAA 342
************************************************************
consensus_2035#0 TCGAAGCGATGCTACCGCCCGAAATGAAGACTATGGCAAAGGAAGCGTTAACCCATTGTA 420
consensus_2035#1 TCGAAGCGATGCTACCGCC-GAAATGAAGACTATGGCAAAGGAAGCGTTAAACCATTGTA 401
******************* ******************************* ********
consensus_2035#0 AAGACACACAAACCTCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTG 480
consensus_2035#1 AAGACACACAAAC-TCATACAAGGACCCGTGCGATAAGGCTTACTTTTCAGCTAAATGTG 460
************* **********************************************
consensus_2035#0 CCGCCGATTTTACCCCCGACACCTTCATGTT-CCCATGATGAATGAACCCGA-TAATTGA 538
consensus_2035#1 CCGC-GATTTTAACCCCGACAC-TTCATGTTTCCCATGATGAATGAACCCGACTAATTGA 518
**** ******* ********* ******** ******************** *******
consensus_2035#0 TGATCTGCGCCCAAAGG-AATATATAAT-GAGTGC-TATCT--ACT--GTTGAAACTATC 591
consensus_2035#1 TGATCTTGGCCCAAAGGGAATATATAATTGAGTGCGTATCCTAACTTGGTTGAAAATATA 578
****** ********* ********** ****** **** *** ******* ***
consensus_2035#0 CGTA--TCCTCCCCTTATTAG-AGAATG-TTTCGATGAAGATGTTTACTGTTTGTGTGTT 647
consensus_2035#1 CGTAATCCTTCCCTTTATTAGCAGAATGGTTTCG-------------------------- 612
**** * **** ******* ****** *****
consensus_2035#0 AGTTTGTGCACCAATCACGGTTTGGAATTACTTTATAGGTAGTAGATTAAACAATAAAGC 707
consensus_2035#1 ------------------------------------------------------------
consensus_2035#0 TTTATTCATAAAAAAAAAAAAAAAA 732
consensus_2035#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||