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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCCCACGCGTCCGGCTCACGAAGCAGATCGTGTTCATGCCCTACTTTGTGCTGATCAATCGGGCAAACTTTGACGTCGAGGTGCAGGAACACCTGCGACCGGGAGATCCGTGGACGAAGGTCGGCGTGAATGAGTGCGTGCCGCTGTGGCCGAAGACGGAGGACAATCGCATGCTGAAGGTGAAGAGTTGCGATCTGCCCGAAGTGACGGCACCGTTCAAGTACACCGAGGTGCAGTGCACGCTGCTGCAATTGCGCAACCGGTACGGTGGCATCAACGTGGACGTGCACGTTACGGAGGGGGCCATCTACATCACGTTTACCGGCTACTATCCCGGGGATGCGCCCGCACTGCTAATGAACCATACCTGTGAGCCGTTCGCTTTCAAGGAGAAGGGTGACGTGAATGGGAAAATACTGATGCCGTCCCAGATGGTGCTGCACACCTGGATCGATCCGGCCGGGGAGCGCAAGATCGTGTGGGAAAGTGGCCCGAAAGCTCAGCCGATCGAAAACGATCTCCGGCGCGACGGTATCAGCGAGTTCAAATCCCCAACGGATGGCGTTATCTACTGGGTATCGTTTCTGAACGGGACGCAGCGCGTGCTGCTCATCACGGATAACTGTAACATTGCATACGGCGTCCATAGCGCTAGCCGGCTAGATCAGGTGACGC]
[+] EMBL BM596306 [CCGCCCACGCGTCCGGCTCACGAAGCAGATCGTGTTCATGCCCTACTTTGTGCTGATCAATCGGGCAAACTTTGACGTCGAGGTGCAGGAACACCTGCGACCGGGAGATCCGTGGACGAAGGTCGGCGTGAATGAGTGCGTGCCGCTGTGGCCGAAGACGGAGGACAATCGCATGCTGAAGGTGAAGAGTTGCGATCTGCCCGAAGTGACGGCACCGTTCAAGTACACCGAGGTGCAGTGCACGCTGCTGCAATTGCGCAACCGGTACGGTGGCATCAACGTGGACGTGCACGTTACGGAGGGGGCCATCTACATCACGTTTACCGGCTACTATCCCGGGGATGCGCCCGCACTGCTAATGAACCATACCTGTGAGCCGTTCGCTTTCAAGGAGAAGGGTGACGTGAATGGGAAAATACTGATGCCGTCCCAGATGGTGCTGCACACCTGGATCGATCCGGCCGGGGAGCGCAAGATCGTGTGGGAAAGTGGCCCGAAAGCTCAGCCGATCGAAAACGATCTCCGGCGCGACGGTATCAGCGAGTTCAAATCCCCAACGGATGGCGTTATCTACTGGGTATCGTTTCTGAACGGGACGCAGCGCGTGCTGCTCATCACGGATAACTGTAACATTGCATACGGCGTCCATAGCGCTAGCCGGCTAGATCAGGTGACGC]
consensusID : consensus_2039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[CCGCAAGGACTGGTCGTGCACAACAGATATACCCGCTCAGCCGCCCGAGTTTGGTGTTTGGACCTTCAATGCATACGATTCTGTAGAGGTTATGTCCCTGCAACTTGGAGTAAAGTATGAAAATCGTTCCGACGGTTTAACCTTGATCGTATACTGTCCATTCTGGATGCTGAACAAGACCGGACTAATGCTGAGCTATCGGGCCAACGACGAGAATACCAACATACTGTACCATCCGCCCGAGTACGAGGGCCCGATACTGTTCTCCTTCCGCGAGAAGGTATTCTTCGGCAAAAAGAAGGCAGCGATCCGGGTCGACACCGGGGAATGGAGCGACAAATTCTCGCTCGACGTGGCCGGCTCGAGCGGCGTCGTACTGTGCCAAGCTAACAACATGACCTACCAGATCGGCGTTAACAACACGCTGACGCACAATTCGCTCACGAAGCAGATCGTGTTCATGCCCTACTTTGTGCTGATCAATCGGGCAAACTTTGACGTCGAGGTGCAGGAACACCTGCGACCGGGAGATCCGTGGACGAAGGTCGGCGTGCAATGATGGCGTGCCGCTGTGGCCGAAGACGGAGGACAATCGCATGCTGAAGGTGAAGAGTTGCGAATCTGCCCGAAGTGACGGCACCGTT]
[+] EMBL BM591288 [CCGCAAGGACTGGTCGTGCACAACAGATATACCCGCTCAGCCGCCCGAGTTTGGTGTTTGGACCTTCAATGCATACGATTCTGTAGAGGTTATGTCCCTGCAACTTGGAGTAAAGTATGAAAATCGTTCCGACGGTTTAACCTTGATCGTATACTGTCCATTCTGGATGCTGAACAAGACCGGACTAATGCTGAGCTATCGGGCCAACGACGAGAATACCAACATACTGTACCATCCGCCCGAGTACGAGGGCCCGATACTGTTCTCCTTCCGCGAGAAGGTATTCTTCGGCAAAAAGAAGGCAGCGATCCGGGTCGACACCGGGGAATGGAGCGACAAATTCTCGCTCGACGTGGCCGGCTCGAGCGGCGTCGTACTGTGCCAAGCTAACAACATGACCTACCAGATCGGCGTTAACAACACGCTGACGCACAATTCGCTCACGAAGCAGATCGTGTTCATGCCCTACTTTGTGCTGATCAATCGGGCAAACTTTGACGTCGAGGTGCAGGAACACCTGCGACCGGGAGATCCGTGGACGAAGGTCGGCGTGCAATGATGGCGTGCCGCTGTGGCCGAAGACGGAGGACAATCGCATGCTGAAGGTGAAGAGTTGCGAATCTGCCCGAAGTGACGGCACCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2039#0 CCGCCCACGCGTCCGGCTCACGAAGCAGATCGTGTTCATGCCCTACTT-TGTGCTGATCA 59
consensus_2039#1 ----------------------CCGCAAGGACTGGTCGTGCACAACAGATATACCCGCTC 38
*** ** ** *** * ** * * *
consensus_2039#0 ATCGGGCAAACTTTGACGTCGAGGTGCAGGAACACCTGCGACC----GGGAGATCCGTGG 115
consensus_2039#1 AGCCGCCCGAGTTTGGTGTTTGGAC-CTTCAATGCATACGATTCTGTAGAGGTTATGTCC 97
* * * * * **** ** * * ** * * *** * * * **
consensus_2039#0 ACGAAGGTCGGCGTGAATGAGTGCGTGCCGCTGTGGCCGAAGACGGAGGACAATCGCATG 175
consensus_2039#1 CTGCAACTTGGAGTAAA-GTATGAAAATCGTTCCGAC---GGTTTAACCTTGATCGTATA 153
* * * ** ** ** * ** ** * * * * * **** **
consensus_2039#0 CTGAAGGTGAAGAGTTGCGATCT-GCCCGAAGTGACGGCACCGTTCAAGTACACCGAGGT 234
consensus_2039#1 CTGTCCATTCTGGATGCTGAACAAGACCGGACTAATGCTGAGCTATCGGGCCAACGACGA 213
*** * * * ** * * *** * * * * * * ** *** *
consensus_2039#0 GCAGTGCACGCTGCTGCAATTGCGCAACCGGTACGGTGGCATCAACGTGGACGTGCACGT 294
consensus_2039#1 GAATACCAACATACTGTACCATCCGCCCGAGTACGAGGGC-CCGATAC---TGTTCTCCT 269
* * ** * *** * * * ***** *** * * ** * * *
consensus_2039#0 TACG-GAGGGGGCCATCTACATCACGTTTACCGGCTACTATCCCGGGGATGCGCCCGCAC 353
consensus_2039#1 TCCGCGAGAAGGTATTCTTCGGCAAAAAGAA-GGCAGCGATCC-GGGTCGACACCGGGGA 327
* ** *** ** *** * ** * *** * **** *** * ** *
consensus_2039#0 TGCTAATGAACCATACCTGTGAGCCGTTCGCT-TTCAAGGAGAAGGGTGACGTGAATGGG 412
consensus_2039#1 ATGGAGCGACAAATTCTCGCTCGACGTGGCCGGCTCGAGCGGCGTCGTACTGTGCCAAGC 387
* ** ** * * * *** * ** ** * ** *** *
consensus_2039#0 AAAATACTGATGCCGTCCCAGAT-GGTGCTGC--ACACCTGGAT---CGATCCGGCCGGG 466
consensus_2039#1 TAACAAC--ATGACCTACCAGATCGGCGTTAACAACACGCTGACGCACAATTCGCTCACG 445
** ** *** * * ****** ** * * **** ** * ** ** * *
consensus_2039#0 GAGCGCAAGATCGTGTGGGAAAGTGGCCCGAAAGCTCAGCCGATCGA--AAACGATCTCC 524
consensus_2039#1 AAGC---AGATCGTGTTCA----TGCCCT--ACTTTGTGCTGATCAATCGGGCAAACTTT 496
*** ********* ** ** * * ** **** * * * **
consensus_2039#0 GGCGCGACGGTATCAGCGAGTTCAAATCCCCAACGGATGGCGTTATCTACTGGGTATCGT 584
consensus_2039#1 GACGTCGAGGTGCAGGA------ACACCTGCGACCGGGAGATCCGTGGACGAAGGTCGGC 550
* ** *** * * * * * ** * * * ** * *
consensus_2039#0 TTCTGAACGGGACGCAGCGCGTGCTGCTCATCACGGATAACTGTAACATTGCATACGGCG 644
consensus_2039#1 GTGCAATGATGGCGTGCCGC-TGTGGCCGAAGACGGAGGACAATCGCAT-GCTGAAGGTG 608
* * * ** *** ** ** * ***** ** * *** ** * ** *
consensus_2039#0 TCCATAGCGCTAGCCGGCTAGATCAGGTGACGC---- 677
consensus_2039#1 AAGA-GTTGCGAATCTGCCCGAAGTGACGGCACCGTT 644
* ** * * ** ** * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||