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Anopheles gambiae
cluster # 2043 cluster # 2043       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2043#0 length = 590 sequences # 1  
consensus_2043#1 length = 536 sequences # 1  

consensusID : consensus_2043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG]

[+] EMBL BM612941             [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG]


>consensus_2043#0 CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGA CGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAA ACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGA GTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAG TGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGT AAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGT GCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAG GGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAAC GGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCA GCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG



consensusID : consensus_2043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG]

[+] EMBL BM582704             [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG]


>consensus_2043#1 CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCT TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC TGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2043#0      ------------CCGCCCACGCGTCCG---------GTCCGAAACGAATGACGACTCGCT 39
consensus_2043#1      CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCT 60
                                    **  ******  *         ************************

consensus_2043#0      TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 99
consensus_2043#1      TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 120
                      ************************************************************

consensus_2043#0      CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 159
consensus_2043#1      CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 180
                      ************************************************************

consensus_2043#0      GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 219
consensus_2043#1      GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 240
                      ************************************************************

consensus_2043#0      AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 279
consensus_2043#1      AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 300
                      ************************************************************

consensus_2043#0      GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 339
consensus_2043#1      GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 360
                      ************************************************************

consensus_2043#0      CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 399
consensus_2043#1      CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 420
                      ************************************************************

consensus_2043#0      ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 459
consensus_2043#1      ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 480
                      ************************************************************

consensus_2043#0      TGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGA 519
consensus_2043#1      TGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG---- 536
                      *************** ****************************************    

consensus_2043#0      AAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGA 579
consensus_2043#1      ------------------------------------------------------------
                                                                                  

consensus_2043#0      ATCGTTCGGGG 590
consensus_2043#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)