These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG] [+] EMBL BM612941 [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG] consensusID : consensus_2043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG] [+] EMBL BM582704 [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2043#0 ------------CCGCCCACGCGTCCG---------GTCCGAAACGAATGACGACTCGCT 39 consensus_2043#1 CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCT 60 ** ****** * ************************ consensus_2043#0 TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 99 consensus_2043#1 TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 120 ************************************************************ consensus_2043#0 CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 159 consensus_2043#1 CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 180 ************************************************************ consensus_2043#0 GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 219 consensus_2043#1 GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 240 ************************************************************ consensus_2043#0 AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 279 consensus_2043#1 AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 300 ************************************************************ consensus_2043#0 GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 339 consensus_2043#1 GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 360 ************************************************************ consensus_2043#0 CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 399 consensus_2043#1 CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 420 ************************************************************ consensus_2043#0 ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 459 consensus_2043#1 ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 480 ************************************************************ consensus_2043#0 TGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGA 519 consensus_2043#1 TGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG---- 536 *************** **************************************** consensus_2043#0 AAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGA 579 consensus_2043#1 ------------------------------------------------------------ consensus_2043#0 ATCGTTCGGGG 590 consensus_2043#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||