These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC] [+] EMBL BM640800 [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC] consensusID : consensus_2044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT] [+] EMBL BM584465 [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2044#0 CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACAC 60 consensus_2044#1 ---------------------CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGT 39 * **** * * * * *** * * * * consensus_2044#0 ATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCA 120 consensus_2044#1 ATG--------CGGTAGAAAAAAAACGC-ATTAAAAAAGTTTATAATTTTTACTTTTTTG 90 *** *** *** * * * *** * * * * * ** **** consensus_2044#0 TTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 180 consensus_2044#1 GT--TTCTTAAAACAGTATT---GTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 145 * * * ********** ************************************* consensus_2044#0 AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 240 consensus_2044#1 AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 205 ************************************************************ consensus_2044#0 GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 300 consensus_2044#1 GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 265 ************************************************************ consensus_2044#0 CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 360 consensus_2044#1 CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 325 ************************************************************ consensus_2044#0 GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 420 consensus_2044#1 GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 385 ************************************************************ consensus_2044#0 CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 480 consensus_2044#1 CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 445 ************************************************************ consensus_2044#0 GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 540 consensus_2044#1 GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 505 ************************************************************ consensus_2044#0 GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 600 consensus_2044#1 GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 565 ************************************************************ consensus_2044#0 GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC------------------ 641 consensus_2044#1 GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT 624 ***************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||