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Anopheles gambiae
cluster # 2044 cluster # 2044       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2044#0 length = 641 sequences # 1  
consensus_2044#1 length = 624 sequences # 1  

consensusID : consensus_2044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC]

[+] EMBL BM640800             [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC]


>consensus_2044#0 CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACAC ATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCA TTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC



consensusID : consensus_2044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence
                              [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT]

[+] EMBL BM584465             [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT]


>consensus_2044#1 CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCA TTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATA CTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGG AAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGAC GTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGA GGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTT TTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGA AGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACC ACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGC ATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCC AACGGCAATCATGGCACTTATGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2044#0      CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACAC 60
consensus_2044#1      ---------------------CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGT 39
                                             *  **** * * *      * *** * * *   *   

consensus_2044#0      ATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCA 120
consensus_2044#1      ATG--------CGGTAGAAAAAAAACGC-ATTAAAAAAGTTTATAATTTTTACTTTTTTG 90
                      ***           *** *** *  * *  *** *   * * *  *     ** ****  

consensus_2044#0      TTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 180
consensus_2044#1      GT--TTCTTAAAACAGTATT---GTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 145
                       *  *  *  **********   *************************************

consensus_2044#0      AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 240
consensus_2044#1      AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 205
                      ************************************************************

consensus_2044#0      GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 300
consensus_2044#1      GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 265
                      ************************************************************

consensus_2044#0      CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 360
consensus_2044#1      CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 325
                      ************************************************************

consensus_2044#0      GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 420
consensus_2044#1      GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 385
                      ************************************************************

consensus_2044#0      CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 480
consensus_2044#1      CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 445
                      ************************************************************

consensus_2044#0      GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 540
consensus_2044#1      GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 505
                      ************************************************************

consensus_2044#0      GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 600
consensus_2044#1      GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 565
                      ************************************************************

consensus_2044#0      GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC------------------ 641
consensus_2044#1      GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT 624
                      *****************************************                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)