cluster # 2055

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2055 cluster # 2055 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2055#0 length = 583 sequences # 1

consensus_2055#1 length = 150 sequences # 1

consensusID : consensus_2055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [CGACCCAACACTTTGGACGCGAATTGGCTGTTTCTGTTGATTTCGCACCATATTCCCGGCATTTTTGTATAGTAATTTGTGTGTACTGGATCGGCAAACGCGTCAACCCCAAACGGCACAAGGCATCTATTCGAAAAGCGCCACAGCGTCGCGTTGTGCCTATTCGTAGCGGTTGGAAGGTTTGTTTGCATCGCTTGTTTACACGCTACCGAGACCTTTGCCAGCCACCAGCCATGGACCAGATGCTGCCGAGTCCGGGATTTTCGATCCCCAGCATCGGGACACCGCTGCACCAGCCGGAGAGGATCAGCAGATTCTGCCCCACGCCTACCAACAGCAACAGTCGATGCCGCACATGACACCGATGGGTGGCCTTAGCTCGAGCAACTACACAATGCCGGCCATCGGTTCGACGTCCGGCAAGAGCATGCACACGTACGCGCCCAGCTTCTCCACCCCCCAGAACATGATTCAACCACAGACACCGCAAAGTCTCATGTCACCGATGGTGCCGATGACGGAATCGAAGGCGGCAGCAACACCGAGCCACCCGCAGAGCGGCACGAGGGGCAGCGTGCGGGAT]

[+] EMBL CNS097AZ             [CGACCCAACACTTTGGACGCGAATTGGCTGTTTCTGTTGATTTCGCACCATATTCCCGGCATTTTTGTATAGTAATTTGTGTGTACTGGATCGGCAAACGCGTCAACCCCAAACGGCACAAGGCATCTATTCGAAAAGCGCCACAGCGTCGCGTTGTGCCTATTCGTAGCGGTTGGAAGGTTTGTTTGCATCGCTTGTTTACACGCTACCGAGACCTTTGCCAGCCACCAGCCATGGACCAGATGCTGCCGAGTCCGGGATTTTCGATCCCCAGCATCGGGACACCGCTGCACCAGCCGGAGAGGATCAGCAGATTCTGCCCCACGCCTACCAACAGCAACAGTCGATGCCGCACATGACACCGATGGGTGGCCTTAGCTCGAGCAACTACACAATGCCGGCCATCGGTTCGACGTCCGGCAAGAGCATGCACACGTACGCGCCCAGCTTCTCCACCCCCCAGAACATGATTCAACCACAGACACCGCAAAGTCTCATGTCACCGATGGTGCCGATGACGGAATCGAAGGCGGCAGCAACACCGAGCCACCCGCAGAGCGGCACGAGGGGCAGCGTGCGGGAT]




>consensus_2055#0
CGACCCAACACTTTGGACGCGAATTGGCTGTTTCTGTTGATTTCGCACCATATTCCCGGC
ATTTTTGTATAGTAATTTGTGTGTACTGGATCGGCAAACGCGTCAACCCCAAACGGCACA
AGGCATCTATTCGAAAAGCGCCACAGCGTCGCGTTGTGCCTATTCGTAGCGGTTGGAAGG
TTTGTTTGCATCGCTTGTTTACACGCTACCGAGACCTTTGCCAGCCACCAGCCATGGACC
AGATGCTGCCGAGTCCGGGATTTTCGATCCCCAGCATCGGGACACCGCTGCACCAGCCGG
AGAGGATCAGCAGATTCTGCCCCACGCCTACCAACAGCAACAGTCGATGCCGCACATGAC
ACCGATGGGTGGCCTTAGCTCGAGCAACTACACAATGCCGGCCATCGGTTCGACGTCCGG
CAAGAGCATGCACACGTACGCGCCCAGCTTCTCCACCCCCCAGAACATGATTCAACCACA
GACACCGCAAAGTCTCATGTCACCGATGGTGCCGATGACGGAATCGAAGGCGGCAGCAAC
ACCGAGCCACCCGCAGAGCGGCACGAGGGGCAGCGTGCGGGAT

consensusID : consensus_2055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [ATTCGGCCCCCCGAGGTTTTNAAACAACACTTTGGGACGCGAATTGGCTGTTTCTGTTGATTCTCGCACCATATTCCCCCGGCANNTTTTCGTATAGGTAAGCTTATGCTGTGTACCTTGGATCGGGGCAAACGCCGTCAAAACCCCCCT]

[+] EMBL AL932795             [ATTCGGCCCCCCGAGGTTTTNAAACAACACTTTGGGACGCGAATTGGCTGTTTCTGTTGATTCTCGCACCATATTCCCCCGGCANNTTTTCGTATAGGTAAGCTTATGCTGTGTACCTTGGATCGGGGCAAACGCCGTCAAAACCCCCCT]




>consensus_2055#1
ATTCGGCCCCCCGAGGTTTTNAAACAACACTTTGGGACGCGAATTGGCTGTTTCTGTTGA
TTCTCGCACCATATTCCCCCGGCANNTTTTCGTATAGGTAAGCTTATGCTGTGTACCTTG
GATCGGGGCAAACGCCGTCAAAACCCCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2055#0      -------------------CGACCCAACACTTTGG-ACGCGAATTGGCTGTTTCTGTTGA 40
consensus_2055#1      ATTCGGCCCCCCGAGGTTTTNAAACAACACTTTGGGACGCGAATTGGCTGTTTCTGTTGA 60
                                           *  *********** ************************

consensus_2055#0      TT-TCGCACCATATTCCC--GGCATTTTT--GTATAGTAATTTGTGTGTACTGGATCGGC 95
consensus_2055#1      TTCTCGCACCATATTCCCCCGGCANNTTTTCGTATAGGTAAGCTTATGCTGTGTACCTTG 120
                      ** ***************  ****  ***  ******  *    * **   ** * *   

consensus_2055#0      AAACGCGTCAACCCCAAACGGCACAAGGCATCTATTCGAAAAGCGCCACAGCGTCGCGTT 155
consensus_2055#1      GATCGGGGCAAACGC---CGTCAAAACCCCCCT--------------------------- 150
                       * ** * *** * *   ** ** **  *  **                           

consensus_2055#0      GTGCCTATTCGTAGCGGTTGGAAGGTTTGTTTGCATCGCTTGTTTACACGCTACCGAGAC 215
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      CTTTGCCAGCCACCAGCCATGGACCAGATGCTGCCGAGTCCGGGATTTTCGATCCCCAGC 275
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      ATCGGGACACCGCTGCACCAGCCGGAGAGGATCAGCAGATTCTGCCCCACGCCTACCAAC 335
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      AGCAACAGTCGATGCCGCACATGACACCGATGGGTGGCCTTAGCTCGAGCAACTACACAA 395
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      TGCCGGCCATCGGTTCGACGTCCGGCAAGAGCATGCACACGTACGCGCCCAGCTTCTCCA 455
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      CCCCCCAGAACATGATTCAACCACAGACACCGCAAAGTCTCATGTCACCGATGGTGCCGA 515
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      TGACGGAATCGAAGGCGGCAGCAACACCGAGCCACCCGCAGAGCGGCACGAGGGGCAGCG 575
consensus_2055#1      ------------------------------------------------------------
                                                                                  

consensus_2055#0      TGCGGGAT 583
consensus_2055#1      --------