These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAAAGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACAGCATCC] [+] EMBL BM579273 [CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAAAGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACAGCATCC] consensusID : consensus_206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCGCCCACGCGTCCGATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT] [+] EMBL BM611297 [CCGCCCACGCGTCCGATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_206#0 CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAA 60 consensus_206#1 ------------------------------------------------------------ consensus_206#0 AGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAA 120 consensus_206#1 ---------------------CCGCCCACGCGTC-CGATTTGAATCGTGTAGAGAATCAA 38 * ** * *********************** consensus_206#0 TGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTT 180 consensus_206#1 TGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTT 98 ************************************************************ consensus_206#0 ACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGC 240 consensus_206#1 ACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGC 158 ************************************************************ consensus_206#0 GGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATA 300 consensus_206#1 GGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATA 218 ************************************************************ consensus_206#0 GGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAG 360 consensus_206#1 GGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAG 278 ************************************************************ consensus_206#0 GACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGT 420 consensus_206#1 GACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGT 338 ************************************************************ consensus_206#0 GCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGC 480 consensus_206#1 GCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGC 398 ************************************************************ consensus_206#0 CCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCT 540 consensus_206#1 CCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCT 458 ************************************************************ consensus_206#0 AACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCT 600 consensus_206#1 AACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCT 518 ************************************************************ consensus_206#0 GCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACA 660 consensus_206#1 GCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT----- 573 ******************************************************* consensus_206#0 GCATCC 666 consensus_206#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||