cluster # 2062

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Anopheles gambiae
cluster # 2062 cluster # 2062 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2062#0 length = 1002 sequences # 1

consensus_2062#1 length = 297 sequences # 1

consensusID : consensus_2062#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1002
fasta sequence

                              [GAGGCAGATCGCCACGAGGTTTAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGTTGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTCTGCGATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCATACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGTCAAGTTTGGAAAATATTAAAGAAAATACTTTAACAACCGAGCCACTTTTTCAGGAAAATTGAAGAAAAATAATAATATTGTTAAAGAAATATCGAACTTCCAATATCATCGCATATATCAGGCATTAGGAAGACCTTTTCAGTTTCTCATCTGCATGTATGAATTAAAAATACTAAAAAAGCACATTTTCGAACCTAGAACCAATTGTGTATAGTATGTATATTCATACAAAAAATTTTGGAAAAGAGTCTAGCATGGTGTGAGTCACTGGAACGTATTAAACTCGTTATGCGGGCTTCCACTGTTGACTTTGTTCAACGCTTTTTGATCACAATATGCTTACTATTCTTATTCTANGACATGCCTGTCGACATTTTAACTAACTCACTCTATGTCAACAAAAAACTNGTAACAGTATAAATTAAGGATACTAANGCTTTTAATTTCAAAAAACAATATGTTCNACTTGGTTTNACGGCCCACCTTTATCACNAGGTTGGAAGACCAATTACCTAGGGGGTTTTAAANGGCCTCACCGAAANTNGCNCACACACATNATTTCAGGGGTNACATATGGTNGGACCAGGTCACGAACGATTTGAGGCNGTGTAAAGANTGGGNTTTTTGGAATTTGATGTAAGGGCCTTCCCACAAGGCAAACGAAGGTCCATTTGGGCAGAGAANCAGNTCCCGTTTGGAGACATCCCGGTGAAATGGCAGNGCCANTGCCGCAGTAACNCGCNGGAGGAGCNCGTCTGTC]

[+] EMBL BX467646             [GAGGCAGATCGCCACGAGGTTTAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGTTGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTCTGCGATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCATACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGTCAAGTTTGGAAAATATTAAAGAAAATACTTTAACAACCGAGCCACTTTTTCAGGAAAATTGAAGAAAAATAATAATATTGTTAAAGAAATATCGAACTTCCAATATCATCGCATATATCAGGCATTAGGAAGACCTTTTCAGTTTCTCATCTGCATGTATGAATTAAAAATACTAAAAAAGCACATTTTCGAACCTAGAACCAATTGTGTATAGTATGTATATTCATACAAAAAATTTTGGAAAAGAGTCTAGCATGGTGTGAGTCACTGGAACGTATTAAACTCGTTATGCGGGCTTCCACTGTTGACTTTGTTCAACGCTTTTTGATCACAATATGCTTACTATTCTTATTCTANGACATGCCTGTCGACATTTTAACTAACTCACTCTATGTCAACAAAAAACTNGTAACAGTATAAATTAAGGATACTAANGCTTTTAATTTCAAAAAACAATATGTTCNACTTGGTTTNACGGCCCACCTTTATCACNAGGTTGGAAGACCAATTACCTAGGGGGTTTTAAANGGCCTCACCGAAANTNGCNCACACACATNATTTCAGGGGTNACATATGGTNGGACCAGGTCACGAACGATTTGAGGCNGTGTAAAGANTGGGNTTTTTGGAATTTGATGTAAGGGCCTTCCCACAAGGCAAACGAAGGTCCATTTGGGCAGAGAANCAGNTCCCGTTTGGAGACATCCCGGTGAAATGGCAGNGCCANTGCCGCAGTAACNCGCNGGAGGAGCNCGTCTGTC]




>consensus_2062#0
GAGGCAGATCGCCACGAGGTTTAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCA
AATGTTGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTT
CTGCGATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGC
AGCATACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTT
GTCAAGTTTGGAAAATATTAAAGAAAATACTTTAACAACCGAGCCACTTTTTCAGGAAAA
TTGAAGAAAAATAATAATATTGTTAAAGAAATATCGAACTTCCAATATCATCGCATATAT
CAGGCATTAGGAAGACCTTTTCAGTTTCTCATCTGCATGTATGAATTAAAAATACTAAAA
AAGCACATTTTCGAACCTAGAACCAATTGTGTATAGTATGTATATTCATACAAAAAATTT
TGGAAAAGAGTCTAGCATGGTGTGAGTCACTGGAACGTATTAAACTCGTTATGCGGGCTT
CCACTGTTGACTTTGTTCAACGCTTTTTGATCACAATATGCTTACTATTCTTATTCTANG
ACATGCCTGTCGACATTTTAACTAACTCACTCTATGTCAACAAAAAACTNGTAACAGTAT
AAATTAAGGATACTAANGCTTTTAATTTCAAAAAACAATATGTTCNACTTGGTTTNACGG
CCCACCTTTATCACNAGGTTGGAAGACCAATTACCTAGGGGGTTTTAAANGGCCTCACCG
AAANTNGCNCACACACATNATTTCAGGGGTNACATATGGTNGGACCAGGTCACGAACGAT
TTGAGGCNGTGTAAAGANTGGGNTTTTTGGAATTTGATGTAAGGGCCTTCCCACAAGGCA
AACGAAGGTCCATTTGGGCAGAGAANCAGNTCCCGTTTGGAGACATCCCGGTGAAATGGC
AGNGCCANTGCCGCAGTAACNCGCNGGAGGAGCNCGTCTGTC

consensusID : consensus_2062#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [GTAAGCATGTTCTTATCAAGTTCACCCATCAGCTAAAGGTAGCTGTCAAAATAGCCCTCTAAGATTTGGAGATTTTAAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGTTGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTTTGCGATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCATACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGT]

[-] EMBL BM601448             [GTAAGCATGTTCTTATCAAGTTCACCCATCAGCTAAAGGTAGCTGTCAAAATAGCCCTCTAAGATTTGGAGATTTTAAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGTTGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTTTGCGATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCATACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGT]




>consensus_2062#1
GTAAGCATGTTCTTATCAAGTTCACCCATCAGCTAAAGGTAGCTGTCAAAATAGCCCTCT
AAGATTTGGAGATTTTAAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGT
TGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTTTGCG
ATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCAT
ACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2062#0      -----------------------------------------------GAGGCAGATCGCC 13
consensus_2062#1      GTAAGCATGTTCTTATCAAGTTCACCCATCAGCTAAAGGTAGCTGTCAAAATAGCCCTCT 60
                                                                      *   **  * * 

consensus_2062#0      ACGA------GGTTT--AATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGT 65
consensus_2062#1      AAGATTTGGAGATTTTAAATTTGCTATTAGGAAGTTTTGTATCTGGTTAAGTTCAAATGT 120
                      * **      * ***  *******************************************

consensus_2062#0      TGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTCTGCG 125
consensus_2062#1      TGTGCGAGTATTTAAAAATCATCTCCCACTGGTTGGTCGGGCGATTTGATGCCTTTTGCG 180
                      ******************************************************* ****

consensus_2062#0      ATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCAT 185
consensus_2062#1      ATTACGGATGCTGGTCTCGAATGATTTTCCCTATACCAAACTTCTAATACTAAGCAGCAT 240
                      ************************************************************

consensus_2062#0      ACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGTCAA 245
consensus_2062#1      ACTGCAAAGAAGCATCATCCGGGCGAAGATGATATCACGTTCATCAAGAGAATTTGT--- 297
                      *********************************************************   

consensus_2062#0      GTTTGGAAAATATTAAAGAAAATACTTTAACAACCGAGCCACTTTTTCAGGAAAATTGAA 305
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GAAAAATAATAATATTGTTAAAGAAATATCGAACTTCCAATATCATCGCATATATCAGGC 365
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      ATTAGGAAGACCTTTTCAGTTTCTCATCTGCATGTATGAATTAAAAATACTAAAAAAGCA 425
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CATTTTCGAACCTAGAACCAATTGTGTATAGTATGTATATTCATACAAAAAATTTTGGAA 485
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      AAGAGTCTAGCATGGTGTGAGTCACTGGAACGTATTAAACTCGTTATGCGGGCTTCCACT 545
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GTTGACTTTGTTCAACGCTTTTTGATCACAATATGCTTACTATTCTTATTCTANGACATG 605
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CCTGTCGACATTTTAACTAACTCACTCTATGTCAACAAAAAACTNGTAACAGTATAAATT 665
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      AAGGATACTAANGCTTTTAATTTCAAAAAACAATATGTTCNACTTGGTTTNACGGCCCAC 725
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CTTTATCACNAGGTTGGAAGACCAATTACCTAGGGGGTTTTAAANGGCCTCACCGAAANT 785
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      NGCNCACACACATNATTTCAGGGGTNACATATGGTNGGACCAGGTCACGAACGATTTGAG 845
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GCNGTGTAAAGANTGGGNTTTTTGGAATTTGATGTAAGGGCCTTCCCACAAGGCAAACGA 905
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      AGGTCCATTTGGGCAGAGAANCAGNTCCCGTTTGGAGACATCCCGGTGAAATGGCAGNGC 965
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CANTGCCGCAGTAACNCGCNGGAGGAGCNCGTCTGTC 1002
consensus_2062#1      -------------------------------------