These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGTATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATACCATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCCATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGAATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTTTGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTTCGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTCCGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGCTGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGGGTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAACCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACCACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCCAGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG] [+] EMBL AL695573 [NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGTATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATACCATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCCATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGAATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTTTGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTTCGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTCCGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGCTGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGGGTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAACCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACCACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCCAGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG] consensusID : consensus_2073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GGTTTCCGTTTCCATCGCTTCCTGGGCGCTTTCAGTCGCTTCTGTCGATGTGTCCATCCTTTCCATTTTGCTCACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTTTGCTTCTTGTTGGGAATAATGCTGACAGGCAGTAGACTCTCTTCTAAATCGACAATGCCATCATCCGTTTGGTCGACGGAAGCAGCAGCACTAGT] [-] EMBL BX614420 [GGTTTCCGTTTCCATCGCTTCCTGGGCGCTTTCAGTCGCTTCTGTCGATGTGTCCATCCTTTCCATTTTGCTCACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTTTGCTTCTTGTTGGGAATAATGCTGACAGGCAGTAGACTCTCTTCTAAATCGACAATGCCATCATCCGTTTGGTCGACGGAAGCAGCAGCACTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2073#0 NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGT 60 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 ATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATAC 120 consensus_2073#1 ---------------------------------------------GGTTTCCGT---TTC 12 ********* * * consensus_2073#0 CATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCC 180 consensus_2073#1 CAT-CGCTTCCTG-GGCGCTTT--CAGT-CGCTT-CTGTCGATGTGTCCATCCTT--TCC 64 *** ******** ******* **** ***** **************** * * *** consensus_2073#0 ATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGA 240 consensus_2073#1 ATTTTGCT-CACCTGCTCAGCGACAGTTGCTTCGTCCGGCTT-TTGCTTCT-TGTTGGGA 121 **** *** ********************************* ******** ******** consensus_2073#0 ATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTT 300 consensus_2073#1 ATAA-TGCTGACAGGCAG-TAGACTCTCTTCTAAATCGACAA-TG--CCATCATCCGTTT 176 **** ************* *********************** ** ************* consensus_2073#0 TGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTT 360 consensus_2073#1 GG---TCGAC--GGAAGCAG--CAGCA--CTAGT-------------------------- 201 * **** * ****** **** ***** consensus_2073#0 CGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTC 420 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 CGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGC 480 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 TGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGG 540 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 GTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAA 600 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 CCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACC 660 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 ACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCC 720 consensus_2073#1 ------------------------------------------------------------ consensus_2073#0 AGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG 769 consensus_2073#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||