These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATATATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGGCCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATGTGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTTACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTAGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAAAGCAATTAGTCGGGCCAGNGGCGGGACAGNACCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGGCCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAAGCCAAGGCTTGGGGTGAAGAATTATCGATACGGGTACGACGGTAACGTTGAGGCGGATTAAGTGNATACACATTCATTACGATTAANN] [+] EMBL BX467143 [GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATATATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGGCCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATGTGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTTACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTAGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAAAGCAATTAGTCGGGCCAGNGGCGGGACAGNACCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGGCCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAAGCCAAGGCTTGGGGTGAAGAATTATCGATACGGGTACGACGGTAACGTTGAGGCGGATTAAGTGNATACACATTCATTACGATTAANN] consensusID : consensus_2074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CCGCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTTGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGGCGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTGTTTGCGCATGTTTTTTTACAGTAGCCAAGCTTGGTGAGATTATCGATCGGTAGAGTAAGTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACTGAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATGATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC] [+] EMBL BM601324 [CCGCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTTGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGGCGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTGTTTGCGCATGTTTTTTTACAGTAGCCAAGCTTGGTGAGATTATCGATCGGTAGAGTAAGTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACTGAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATGATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2074#0 GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATAT 60 consensus_2074#1 ------------------------------------------------------------ consensus_2074#0 ATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGG 120 consensus_2074#1 ------------------------------------------------------------ consensus_2074#0 CCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATG 180 consensus_2074#1 ------------------------------------------------------------ consensus_2074#0 TGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTT 240 consensus_2074#1 ------------------------------------------------------------ consensus_2074#0 ACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTC 300 consensus_2074#1 ------------------------------------------------CCGCCCGGTTTC 12 * ********* consensus_2074#0 GCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTA 360 consensus_2074#1 GCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTT 72 *********************************************************** consensus_2074#0 GGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTT-ATG 419 consensus_2074#1 GGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATG 132 ******************************************************** *** consensus_2074#0 TATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAA-AGCAATTAGTCGGG 478 consensus_2074#1 TATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGG 192 ********************************************* * ** * * ** consensus_2074#0 C----CAGNGGCGGGACAGNA--CCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGG 532 consensus_2074#1 CGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTG 252 * *** * *** * *** ** *** *** * * * * ** * consensus_2074#0 CCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAA 592 consensus_2074#1 TTTGCGCATGTTTTTTTACAGTAGCCAAGCTT--GGTGAGATTATCGATCGGTAGAGTAA 310 ** * * * ** ** ** * ** * ** ***** consensus_2074#0 GCCAAG-GCTTGGGGTGAAGAATTATCGATACGGGTACGACG-GTAACGTTGAGGCGGAT 650 consensus_2074#1 GTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACT 370 * ** * * * * ** ** ** *** ** ** * * * * * * * consensus_2074#0 TAAGTGNATACACATTCATTACGATTAANN------------------------------ 680 consensus_2074#1 GAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATG 430 ** * *** * ** ** * * consensus_2074#0 --------------------------------------------------------- consensus_2074#1 ATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC 487 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||