Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2085 cluster # 2085       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2085#0 length = 664 sequences # 1  
consensus_2085#1 length = 370 sequences # 1  

consensusID : consensus_2085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG]

[+] EMBL AL695664             [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG]


>consensus_2085#0 TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCA AAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAAC GGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACA AAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACA GAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGG AAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATAC GTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAA CAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTT GTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTA ACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAA CCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGA AGCG



consensusID : consensus_2085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence
                              [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA]

[+] EMBL BX618700             [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA]


>consensus_2085#1 CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTT AAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGC TGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGC AAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAA CGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGG ACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGA TTGAAAATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2085#0      ------------------------------------------------------------
consensus_2085#1      CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTT 60
                                                                                  

consensus_2085#0      ------------------------------------------------------------
consensus_2085#1      AAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGC 120
                                                                                  

consensus_2085#0      TGCAAGAATTGCCCGAGGN--TAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACG 58
consensus_2085#1      TGGAACTGGCGCCCGACACAGCGGACAGGTG-GTTGGCCAAGCTTCGGGCACAGTACACG 179
                      ** **     ******       ******** ****************************

consensus_2085#0      CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 118
consensus_2085#1      CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 239
                      ************************************************************

consensus_2085#0      ACGGGAGCGAGCGTATGCATTCAGCTGGCG--CCTGTTTCAGTATTACCACTTCGAGGCG 176
consensus_2085#1      ACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCG 299
                      *****************************   ****************************

consensus_2085#0      GACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGC 236
consensus_2085#1      GACAAAGACT-GTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTG--CCGAT--- 353
                      ********** **************************************   *****   

consensus_2085#0      AACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCT 296
consensus_2085#1      -GCACAGATTGAAAATAA------------------------------------------ 370
                        ** *  ***  **                                             

consensus_2085#0      GGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAA 356
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTAC 416
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      AAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGA 476
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      AGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGC 536
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      GTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTT 596
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGC 656
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ACGAAGCG 664
consensus_2085#1      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)