These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG] [+] EMBL AL695664 [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG] consensusID : consensus_2085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA] [+] EMBL BX618700 [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2085#0 ------------------------------------------------------------ consensus_2085#1 CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTT 60 consensus_2085#0 ------------------------------------------------------------ consensus_2085#1 AAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGC 120 consensus_2085#0 TGCAAGAATTGCCCGAGGN--TAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACG 58 consensus_2085#1 TGGAACTGGCGCCCGACACAGCGGACAGGTG-GTTGGCCAAGCTTCGGGCACAGTACACG 179 ** ** ****** ******** **************************** consensus_2085#0 CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 118 consensus_2085#1 CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 239 ************************************************************ consensus_2085#0 ACGGGAGCGAGCGTATGCATTCAGCTGGCG--CCTGTTTCAGTATTACCACTTCGAGGCG 176 consensus_2085#1 ACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCG 299 ***************************** **************************** consensus_2085#0 GACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGC 236 consensus_2085#1 GACAAAGACT-GTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTG--CCGAT--- 353 ********** ************************************** ***** consensus_2085#0 AACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCT 296 consensus_2085#1 -GCACAGATTGAAAATAA------------------------------------------ 370 ** * *** ** consensus_2085#0 GGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAA 356 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 ATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTAC 416 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 AAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGA 476 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 AGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGC 536 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 GTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTT 596 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 ATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGC 656 consensus_2085#1 ------------------------------------------------------------ consensus_2085#0 ACGAAGCG 664 consensus_2085#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||