cluster # 2088

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Anopheles gambiae
cluster # 2088 cluster # 2088 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2088#0 length = 620 sequences # 1

consensus_2088#1 length = 593 sequences # 1

consensusID : consensus_2088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTCCCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCTAGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAATAGTATAAT]

[+] EMBL BM583603             [CCGAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTCCCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCTAGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAATAGTATAAT]




>consensus_2088#0
CCGAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGG
CTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGC
AAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCA
TCGAGACGGAACATACGGGTCATGAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCAC
TGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCA
TCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCG
TGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCA
TTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGA
AGAAAACGTTCCCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCG
CCTTTTCCCCTAGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACA
ATACAATCCAATAGTATAAT

consensusID : consensus_2088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGTGTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCTTCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA]

[+] EMBL BX469869             [GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGGTCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGGAACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCCAGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGTGTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCTTCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGCCAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCGATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTGGTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAGCTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA]




>consensus_2088#1
GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGG
TCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGG
AACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCC
AGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGT
GTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCT
TCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGC
CAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCG
ATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTG
GTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAG
CTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2088#0      ----------------------------CCGAAACATTTCGCTTTTACGCACTTCGTCGG 32
consensus_2088#1      GGCAAGAATCGGCACGTGGAAACAAACAACAAAACATTTCGCTTTTACGCACTTCGTCGG 60
                                                   * *****************************

consensus_2088#0      TCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGG 92
consensus_2088#1      TCTCGAATTAGTGGCCAATACCACATGGCTCGGCTAGTAGCAATGGCCGATTACGACTGG 120
                      ************************************************************

consensus_2088#0      AACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCC 152
consensus_2088#1      AACGAGCAACACCGGCAGCAGGTCCTGCAAGGACGACAGATTCTAGAGCGCACCTCCGCC 180
                      ************************************************************

consensus_2088#0      AGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGT---- 208
consensus_2088#1      AGTCTGGCCCGATCGAATCAGATCGCCATCGAGACGGAACATACGGGTCATGAGGTGAGT 240
                      ********************************************************    

consensus_2088#0      ------------------------------------------------------------
consensus_2088#1      GTGCCGTGTACCGAATGTTCTACCCGAGGATGTGTCCACGGCTCTTCCCAACACCTTCCT 300
                                                                                  

consensus_2088#0      -----------------AATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGC 251
consensus_2088#1      TCTTTCCTGTGCTAGGTAATAAACGAGCTTGAGGTGCAGCGAGAATCACTGCTGCGGAGC 360
                                       *******************************************

consensus_2088#0      CAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCG 311
consensus_2088#1      CAGCGCCGGCTGGAAAATGCCAACGATGATCTGAGCAAATCCGGCGCCATCATCCGTGCG 420
                      ************************************************************

consensus_2088#0      ATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTG 371
consensus_2088#1      ATGAAAAGGAATGTGCTGTACAATAAGCTCATTCTCATCATGATCATCGTGATGGAGGTG 480
                      ************************************************************

consensus_2088#0      GTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAG 431
consensus_2088#1      GTCATTCTAGCGGGCATGATCGCGCTGAAGTTTATGTAGCGAACCTGCATTCCCTACAAG 540
                      ************************************************************

consensus_2088#0      CTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAAAACGTTC 491
consensus_2088#1      CTATATGCCAAAGCGTAAATGCATCAGAACGTGCCGCTATGGAAAGGGAAGAA------- 593
                      *****************************************************       

consensus_2088#0      CCTTGTCGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCT 551
consensus_2088#1      ------------------------------------------------------------
                                                                                  

consensus_2088#0      AGCAAGAAAAAAATTGTTAATCAGTTCACATTTATTGTATCCCTCTACAATACAATCCAA 611
consensus_2088#1      ------------------------------------------------------------
                                                                                  

consensus_2088#0      TAGTATAAT 620
consensus_2088#1      ---------