These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGAGGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAACATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTTCGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCTGGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCATTTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATATATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA] [+] EMBL BM638093 [CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGAGGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAACATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTTCGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCTGGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCATTTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATATATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA] consensusID : consensus_2090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CCGCACACACACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAACGGGAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGCCCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTCCATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAGCGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGACAACCCTATAACGAATGAACCGGGAATGAAGA] [+] EMBL BM585327 [CCGCACACACACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAACGGGAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGCCCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTCCATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAGCGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGACAACCCTATAACGAATGAACCGGGAATGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2090#0 CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGA 60 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 GGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAA 120 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 CATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTT 180 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 CGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCT 240 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 GGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCAT 300 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 TTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATAT 360 consensus_2090#1 ------------------------------------------------------------ consensus_2090#0 ATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAAC 420 consensus_2090#1 ---------------------CCGCACACA-CACACGAATAAGTATAGCAATCTGTTAAC 38 *** * ** ***************************** consensus_2090#0 ATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACA---- 476 consensus_2090#1 ATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACA 98 ******************************************************** consensus_2090#0 TCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCA 536 consensus_2090#1 TCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCA 158 ************************************** ********************* consensus_2090#0 CTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGA 596 consensus_2090#1 CTCGGGCAAGCGTTTA---------------ACGGGAAGCATTAGGGCAAGTGTTTTTGA 203 **************** **** ************************ consensus_2090#0 ATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCA 656 consensus_2090#1 ATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCA 263 ************************************************************ consensus_2090#0 ACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA----------------- 699 consensus_2090#1 ACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGC 323 ******************************************* consensus_2090#0 ------------------------------------------------------------ consensus_2090#1 CCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTC 383 consensus_2090#0 ------------------------------------------------------------ consensus_2090#1 CATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAG 443 consensus_2090#0 ------------------------------------------------------------ consensus_2090#1 CGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGA 503 consensus_2090#0 -------------------------------- consensus_2090#1 CAACCCTATAACGAATGAACCGGGAATGAAGA 535 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||