These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [TCACGCACGAACTCGCCGAGGATTAAAAGTGGNATCGAGAGCTCTAGAGAANCTCTGCAGCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCAGTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTNTGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGAATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAGTTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCGCCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGACANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCTNTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCCCCCGTATAAAAATNNTTTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTTNTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTACTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCCCACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTCTACATACATTAATACCCCCCTCTACCA] [+] EMBL AL933233 [TCACGCACGAACTCGCCGAGGATTAAAAGTGGNATCGAGAGCTCTAGAGAANCTCTGCAGCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCAGTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTNTGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGAATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAGTTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCGCCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGACANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCTNTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCCCCCGTATAAAAATNNTTTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTTNTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTACTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCCCACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTCTACATACATTAATACCCCCCTCTACCA] consensusID : consensus_2096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCAGCGAGGAATCAGTCATATCGGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGAGTAGATGAAAGCAACACTAATTGTTTGTTTATGGTACCTTTTCTTTCTGGATTTTGGTTGTGCGACACTCCCTTGACCCTTTCTTATGGGAAGAGAACTTTATATGCTGGGAATAGGACTCTATGGCATTCTTTTTGGACAAACTTATTGGAAATTCCTGGTAGATTTCTCCGCAAGGGTGCTATAGAATCCAACACCCATGACGCACAGTTCATTTCCTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAAAACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTTTCTCATTTCATGAAAAGCCTGTTTTATACTAATATTCTGCCTTTTCATTGGCCTTTTTCTTTGATACTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTATTTTTTTAGATAAACAATGTTTCGATACTATTTTACCGTCTTTAGCAAACCAAGAAAGTGTTCTAACACAGGGTTATTGCATACTACAAATAGCAAAGGCATATTTCACTATCATACTTATGTACTACC] [+] EMBL BX609077 [AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCAGCGAGGAATCAGTCATATCGGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGAGTAGATGAAAGCAACACTAATTGTTTGTTTATGGTACCTTTTCTTTCTGGATTTTGGTTGTGCGACACTCCCTTGACCCTTTCTTATGGGAAGAGAACTTTATATGCTGGGAATAGGACTCTATGGCATTCTTTTTGGACAAACTTATTGGAAATTCCTGGTAGATTTCTCCGCAAGGGTGCTATAGAATCCAACACCCATGACGCACAGTTCATTTCCTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAAAACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTTTCTCATTTCATGAAAAGCCTGTTTTATACTAATATTCTGCCTTTTCATTGGCCTTTTTCTTTGATACTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTATTTTTTTAGATAAACAATGTTTCGATACTATTTTACCGTCTTTAGCAAACCAAGAAAGTGTTCTAACACAGGGTTATTGCATACTACAAATAGCAAAGGCATATTTCACTATCATACTTATGTACTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2096#0 TCACGCACGAACTCGCCGAGGATTAAAAGTGGNAT-CGAGAGCTCTAGAGAANCTCTGCA 59 consensus_2096#1 -AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCA 59 * * ** ** * ******** ** **************** ****** consensus_2096#0 GCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCA 119 consensus_2096#1 GCGAGGAATCAGTCATATC-GGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGA 118 ********** *** **** ********************* *************** * consensus_2096#0 GTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTN 179 consensus_2096#1 GTAG-ATGAA-AGCAACACTAATTGTTTGTTTATGGTACCTTTTCT----TTCTGGATTT 172 **** ***** * ********* ** * * * ******** ** * ****** ** consensus_2096#0 TGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGA 239 consensus_2096#1 TGGTTGTGCGACACTCCCTTGACCCT-TTCTTATGGGAA-GAGAACTTTATATGCTGGGA 230 *********** ************** ********** * ******************** consensus_2096#0 ATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAG 299 consensus_2096#1 ATAGGACT-CTATG-GCATTCTTT--TTGGACAA-ACTTAT-TGGAAA---TTCCTGG-- 279 ** ***** ***** **** ** ******* ****** **** * * *** consensus_2096#0 TTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCG 359 consensus_2096#1 --------TAGATTTCTCCGCA---AGGGTGCTATAGAATCCAACACCCATGACGCACAG 328 ** * * ***** ** ** * * * ** * * * consensus_2096#0 CCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGA 419 consensus_2096#1 TTCATTTC---CTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAA 385 **** * * * *** * * * * * ** ** ** * * * * consensus_2096#0 CANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCT 479 consensus_2096#1 AACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTT-------TCTCATTTC 438 * * ** * *** ** * ** ** *** * *** consensus_2096#0 NTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCC 539 consensus_2096#1 ATGAAAA-GCCTGTTTTATACTAATATTCTGCCTTT--TCATTGGCCTTTTTCTTTGATA 495 * *** * * * *** ** * * *** * * * consensus_2096#0 CCCGTATAAAAATNNT-TTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTT 598 consensus_2096#1 CTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTA---TTT 552 * * * * * ** * ** * * * ******* ** consensus_2096#0 NTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTA 658 consensus_2096#1 TTTTAGATAAAC-AATGTTTCGATACTATTTTACCGTC---TTTAGCAAACCAAGAAA-G 607 * * **** ** * ** * * ** **** ** ** * ** consensus_2096#0 CTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCC 718 consensus_2096#1 TGTTCTAACACAGGGTTATTGCAT-----ACTACAAATAGCA---AAGGCATATTTCACT 659 * * * * ** *** * * **** ** ** ** * consensus_2096#0 CACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTC 778 consensus_2096#1 ATCATACTTATGTACTACC----------------------------------------- 678 ** ** * ** ** consensus_2096#0 TACATACATTAATACCCCCCTCTACCA 805 consensus_2096#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||