These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [CAAGAATCGGCACGATGGGTTCACCAGCCGCGAAGCGAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGTGGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGGACGAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGTGCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACTGTGCCTGGCCCGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGTTCAAAAAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCAGTGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCACCCACGCCAAACATGGGCTGGAAGATACAACATTCGTCCNATAGCTACAGGACAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNGAGTANCTCTAATTGCGAAGAAGAC] [+] EMBL BX469795 [CAAGAATCGGCACGATGGGTTCACCAGCCGCGAAGCGAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGTGGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGGACGAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGTGCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACTGTGCCTGGCCCGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGTTCAAAAAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCAGTGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCACCCACGCCAAACATGGGCTGGAAGATACAACATTCGTCCNATAGCTACAGGACAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNGAGTANCTCTAATTGCGAAGAAGAC] consensusID : consensus_2106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCGGACAGCCGTAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCGTGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCAAAACAAGGGCGTTTGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACACGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCGACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCGATGGGTCGTCTAGATTCGAACAACGAACCGACCTACCACGACGTCTACCCCAAGCGCAATGTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTTCAGTTTCACCAGCCGCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAGCGGGGCTACCAGGGCATTACTGGGCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCGCCCGAGTTCTACCATCCG] [+] EMBL BX627682 [GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCGGACAGCCGTAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCGTGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCAAAACAAGGGCGTTTGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACACGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCGACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCGATGGGTCGTCTAGATTCGAACAACGAACCGACCTACCACGACGTCTACCCCAAGCGCAATGTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTTCAGTTTCACCAGCCGCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAGCGGGGCTACCAGGGCATTACTGGGCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCGCCCGAGTTCTACCATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2106#0 CAAGAATCGGCACGATGGGTTCACCAGC-CGCGAAGCGAACCTGAAGGATGTGTGGGAAC 59 consensus_2106#1 ---------GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCG 51 ** * ** ** *** ** * * * * ** *** ** consensus_2106#0 GACAGCAGATCTTTGACCGTTCCGTGC--GTGCGTTTACAGCCACGCTCGGGCCGGCCGG 117 consensus_2106#1 GACAGCCG-TAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCG 110 ****** * * * * * * ** ** * * *** *** * * consensus_2106#0 TGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACAT 177 consensus_2106#1 TGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCA 170 **** * * * * *** ** * ** ** ** * ** * consensus_2106#0 CAATGGGTTCCTCGTGCCGGAACTGTG-GCTCCGCCGTGGCCTTACCTACTCGTTCCTCG 236 consensus_2106#1 AAACAAGGGCGTT-TGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACA 229 ** * * * ** *** ** ** * ** ** * * **** * * * * consensus_2106#0 TGCGCGGT---GGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGG 293 consensus_2106#1 CGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCG 289 * * * * *** * ** ** *** ** * ** * * * * consensus_2106#0 AC--GAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGT 351 consensus_2106#1 ACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCG---ATGG 346 ** * * ** * * * * * * ***** * *** * * * * consensus_2106#0 GCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACT 411 consensus_2106#1 GTCGTCTAGATTCGAACA-ACGAACCG--ACCTACCACGAC-GTCTACCCCAAGCGCAAT 402 * * * * * ** *** *** * ** ** * ** * * ** * consensus_2106#0 GTGCCTGGCC-CGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGT 470 consensus_2106#1 GTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTT--CAGTTTCACCAGCC 460 **** ** * *** * ** * ** *** *** * ** *** * * consensus_2106#0 TCAAA---AAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCA---G 524 consensus_2106#1 GCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTG 520 * ** ** * ** * ** * * * * * * * * consensus_2106#0 TGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCAC 584 consensus_2106#1 CGTTTACAGCCACGCTCGGGCCGGCCGGT-GGAAAGCGGGGCTACCAGGGCA-TTACTGG 578 *** * **** * ** ** ** ** * ** ** *** * ** * consensus_2106#0 CCACGCCAAACATGGGCTGGAA-GATACAACA--------TTCGTCCNATAGCTACAGGA 635 consensus_2106#1 GCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCT 638 **** * ** **** * **** ** **** * * ** * consensus_2106#0 CAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNG 695 consensus_2106#1 CCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCG-CCCG 697 * * ** *** * * ** * * ** * * * *** * * ** * consensus_2106#0 AGTANCTCTAATTGCGAAGAAGAC 719 consensus_2106#1 AGTTCTACCATCCG---------- 711 *** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||