These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [CCCACCGGTGGGCTGAAAAGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTTT] [+] EMBL BX627211 [CCCACCGGTGGGCTGAAAAGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTTT] consensusID : consensus_2111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAG] [+] EMBL BM652039 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2111#0 ---CCCACCGGTGGGCTGAAA-----AGTGACCACACGCAAATCGTTCTTTACTTTGCCC 52 consensus_2111#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCC 60 ***** ** ** * ********************************* consensus_2111#0 AGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAAC 112 consensus_2111#1 AGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAAC 120 ************************************************************ consensus_2111#0 CCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGT 172 consensus_2111#1 CCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGT 180 ************************************************************ consensus_2111#0 TGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCC 232 consensus_2111#1 TGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCC 240 ************************************************************ consensus_2111#0 ACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGC 292 consensus_2111#1 ACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGC 300 ************************************************************ consensus_2111#0 AGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCG 352 consensus_2111#1 AGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCG 360 ************************************************************ consensus_2111#0 TCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGA 412 consensus_2111#1 TCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGA 420 ************************************************************ consensus_2111#0 ACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACAT 472 consensus_2111#1 ACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACAT 480 ************************************************************ consensus_2111#0 TTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTT 532 consensus_2111#1 TTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTT 540 ************************************************************ consensus_2111#0 ATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTT 592 consensus_2111#1 ATCTATGAATTATTCATTTCCGTACGAATAAAG--------------------------- 573 ********************************* consensus_2111#0 T 593 consensus_2111#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||