cluster # 2113

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Anopheles gambiae
cluster # 2113 cluster # 2113 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2113#0 length = 667 sequences # 1

consensus_2113#1 length = 630 sequences # 1

consensusID : consensus_2113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGGCGGAGTGCCCGTGGGTTTCCCTGTGCCATGTTTGAAGTGTGTTGCTCGCGGGGCTCCGCACCATCCACACTTACCTGTTTTTTTTTTTTTAATTACCACCATCCTCTCCAAACCACCCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGCGTCATAATCGGCACCATTGTGTAGTGTTCTGTGCGCCGGAGTATTGTATTCTTATTTTTCGAGAAGCTCCGCCACTTTCATTCCCTCCCTCCCCCCTCCCCCCTCACCCATCATTTCCCATTGCGCTTTTGCATTCAGCTTTAGTAATGCTCCGTTACGCGTGTAACGCCCGCCAAAAACAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTTTAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGATTAAGAAGAAGAAGAAGAAAACAAAGATACCCCTTCACAATAGTGTATGGAGCGTGTGCCGCGCTTCCCCTTCAAGATCGTATTAGGGCGAGCGAGCGAGCGAGAGAGAGAGGGAGAGAGAAAGAATGAGAGAGTGAG]

[+] EMBL BM600720             [CCGGCGGAGTGCCCGTGGGTTTCCCTGTGCCATGTTTGAAGTGTGTTGCTCGCGGGGCTCCGCACCATCCACACTTACCTGTTTTTTTTTTTTTAATTACCACCATCCTCTCCAAACCACCCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGCGTCATAATCGGCACCATTGTGTAGTGTTCTGTGCGCCGGAGTATTGTATTCTTATTTTTCGAGAAGCTCCGCCACTTTCATTCCCTCCCTCCCCCCTCCCCCCTCACCCATCATTTCCCATTGCGCTTTTGCATTCAGCTTTAGTAATGCTCCGTTACGCGTGTAACGCCCGCCAAAAACAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTTTAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGATTAAGAAGAAGAAGAAGAAAACAAAGATACCCCTTCACAATAGTGTATGGAGCGTGTGCCGCGCTTCCCCTTCAAGATCGTATTAGGGCGAGCGAGCGAGCGAGAGAGAGAGGGAGAGAGAAAGAATGAGAGAGTGAG]




>consensus_2113#0
CCGGCGGAGTGCCCGTGGGTTTCCCTGTGCCATGTTTGAAGTGTGTTGCTCGCGGGGCTC
CGCACCATCCACACTTACCTGTTTTTTTTTTTTTAATTACCACCATCCTCTCCAAACCAC
CCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTGTC
TCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGCGTCA
TAATCGGCACCATTGTGTAGTGTTCTGTGCGCCGGAGTATTGTATTCTTATTTTTCGAGA
AGCTCCGCCACTTTCATTCCCTCCCTCCCCCCTCCCCCCTCACCCATCATTTCCCATTGC
GCTTTTGCATTCAGCTTTAGTAATGCTCCGTTACGCGTGTAACGCCCGCCAAAAACAAAA
AAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTTTAGTGCAG
TGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGATTAAGAAGAAG
AAGAAGAAAACAAAGATACCCCTTCACAATAGTGTATGGAGCGTGTGCCGCGCTTCCCCT
TCAAGATCGTATTAGGGCGAGCGAGCGAGCGAGAGAGAGAGGGAGAGAGAAAGAATGAGA
GAGTGAG

consensusID : consensus_2113#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CATCCTCTCCAAACCACCCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTCTCTGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGCGTCATAATCGGCACCATTTTGTAGTGTTCTGTGGGCCGGAGTATTGTATTCTTATTTTTCGATAAGCTCCGCCACTTTCATCCGCTCCCCCCCCCCTCTCCCCTCTCCCATCATTTCCCATTGCGCTTTTGCATTCAGCTTTAGTACTGCTCCGTTACGCGTGTAACGCCCGCCAAAAACAAAAAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTTTAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGAGTAAGAAGAAGAAGAAGAAAACAAAGATACACATTCACAATAGTGTATGGAGCGTGTGCCGCGCTTCCCCTTCAAGATCGTATTAGGGAAAGCAGAAAAGCAGGGAAAACGACAGAAGTAAACGAACAGAAAAGGAAGAAGAAGAAAAAGAAGAAGACGAAAAATATGATAATGAAGAAGAAGAAAAAACGAAAAT]

[+] EMBL BX622202             [CATCCTCTCCAAACCACCCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTCTCTGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGCGTCATAATCGGCACCATTTTGTAGTGTTCTGTGGGCCGGAGTATTGTATTCTTATTTTTCGATAAGCTCCGCCACTTTCATCCGCTCCCCCCCCCCTCTCCCCTCTCCCATCATTTCCCATTGCGCTTTTGCATTCAGCTTTAGTACTGCTCCGTTACGCGTGTAACGCCCGCCAAAAACAAAAAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTTTAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGAGTAAGAAGAAGAAGAAGAAAACAAAGATACACATTCACAATAGTGTATGGAGCGTGTGCCGCGCTTCCCCTTCAAGATCGTATTAGGGAAAGCAGAAAAGCAGGGAAAACGACAGAAGTAAACGAACAGAAAAGGAAGAAGAAGAAAAAGAAGAAGACGAAAAATATGATAATGAAGAAGAAGAAAAAACGAAAAT]




>consensus_2113#1
CATCCTCTCCAAACCACCCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGC
CTCTCTCTCTCTCTCTCTGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGT
GACACGTGTTTGCTGGCGTCATAATCGGCACCATTTTGTAGTGTTCTGTGGGCCGGAGTA
TTGTATTCTTATTTTTCGATAAGCTCCGCCACTTTCATCCGCTCCCCCCCCCCTCTCCCC
TCTCCCATCATTTCCCATTGCGCTTTTGCATTCAGCTTTAGTACTGCTCCGTTACGCGTG
TAACGCCCGCCAAAAACAAAAAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTG
CTCGGTTGGGCAAGGTTTAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATT
GGACCCTTTTTCGAGTAAGAAGAAGAAGAAGAAAACAAAGATACACATTCACAATAGTGT
ATGGAGCGTGTGCCGCGCTTCCCCTTCAAGATCGTATTAGGGAAAGCAGAAAAGCAGGGA
AAACGACAGAAGTAAACGAACAGAAAAGGAAGAAGAAGAAAAAGAAGAAGACGAAAAATA
TGATAATGAAGAAGAAGAAAAAACGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2113#0      CCGGCGGAGTGCCCGTGGGTTTCCCTGTGCCATGTTTGAAGTGTGTTGCTCGCGGGGCTC 60
consensus_2113#1      ------------------------------------------------------------
                                                                                  

consensus_2113#0      CGCACCATCCACACTTACCTGTTTTTTTTTTTTTAATTACCACCATCCTCTCCAAACCAC 120
consensus_2113#1      -------------------------------------------CATCCTCTCCAAACCAC 17
                                                                 *****************

consensus_2113#0      CCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCT--- 177
consensus_2113#1      CCCCCACGCCCCCTCGTCCTGTGCTCTCGCTCTATCACAACGCCTCTCTCTCTCTCTCTC 77
                      *********************************************************   

consensus_2113#0      -GTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGC 236
consensus_2113#1      TGTCTCTGTGTGTCTCAGCGATGTCTCAGAGCGACACCCGCGTGACACGTGTTTGCTGGC 137
                       ***********************************************************

consensus_2113#0      GTCATAATCGGCACCATTGTGTAGTGTTCTGTGCGCCGGAGTATTGTATTCTTATTTTTC 296
consensus_2113#1      GTCATAATCGGCACCATTTTGTAGTGTTCTGTGGGCCGGAGTATTGTATTCTTATTTTTC 197
                      ****************** ************** **************************

consensus_2113#0      GAGAAGCTCCGCCACTTTCATTCCCTCCCTCCCCCCTCCCCCCTCACCCATCATTTCCCA 356
consensus_2113#1      GATAAGCTCCGCCACTTTCATCCGCTCCCCCCCCCCTCTCCCCTCTCCCATCATTTCCCA 257
                      ** ****************** * ***** ******** ****** **************

consensus_2113#0      TTGCGCTTTTGCATTCAGCTTTAGTAATGCTCCGTTACGCGTGTAACGCCCGCCAAAAAC 416
consensus_2113#1      TTGCGCTTTTGCATTCAGCTTTAGTACTGCTCCGTTACGCGTGTAACGCCCGCCAAAAAC 317
                      ************************** *********************************

consensus_2113#0      AAAAAAAA----CAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTT 472
consensus_2113#1      AAAAAAAAAAAACAAACATAACACCGCCCGAACGCTTTCTTTGCTCGGTTGGGCAAGGTT 377
                      ********    ************************************************

consensus_2113#0      TAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGATTA 532
consensus_2113#1      TAGTGCAGTGTGCGCCATCTTGGTGCGCACGTTATTAATAATTGGACCCTTTTTCGAGTA 437
                      ********************************************************* **

consensus_2113#0      AGAAGAAGAAGAAGAAAACAAAGATACCCCTTCACAATAGTGTATGGAGCGTGTGCCGCG 592
consensus_2113#1      AGAAGAAGAAGAAGAAAACAAAGATACACATTCACAATAGTGTATGGAGCGTGTGCCGCG 497
                      *************************** * ******************************

consensus_2113#0      CTTCCCCTTCAAGATCGTATTAGGGCGAGCGAGCGAGCGAGAGAGAGAGGGAGAGAGAAA 652
consensus_2113#1      CTTCCCCTTCAAGATCGTATTAGGGAAAGCAGAAAAGCAGGGAAAACGACAGAAGTAAAC 557
                      *************************  ***     ***  *  * *       **  ** 

consensus_2113#0      GAATGAGAGAGTGAG--------------------------------------------- 667
consensus_2113#1      GAACAGAAAAGGAAGAAGAAGAAAAAGAAGAAGACGAAAAATATGATAATGAAGAAGAAG 617
                      ***    * **  **                                             

consensus_2113#0      -------------
consensus_2113#1      AAAAAACGAAAAT 630