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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATTCGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTTGTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATAAAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCACGCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGGTGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGACGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAATTACGCCGAGTATGCCGACTGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAATCACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGTTCGTTATAACATGCTAACTAATGCTTGAACAAATAAAATGAATCTATTTGTATAATTTTAACAATATTGTGCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCAATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCTAGAATAATTTTTTTCAATGGAAATAAAGNTATT]
[+] EMBL BX621385 [GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATTCGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTTGTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATAAAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCACGCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGGTGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGACGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAATTACGCCGAGTATGCCGACTGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAATCACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGTTCGTTATAACATGCTAACTAATGCTTGAACAAATAAAATGAATCTATTTGTATAATTTTAACAATATTGTGCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCAATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCTAGAATAATTTTTTTCAATGGAAATAAAGNTATT]
consensusID : consensus_2121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[AAATCGGTAGCATATTTTATGCTAGAGATATTTCTGTTCCACCACCATTTTCTGCACAACACATGTTTGCAGAGTAATTCATTAACCGACGGAGTATCCCCGGTGGCACATGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATGACTGGCTTTGTTGTTTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTGGCGCCCAGATGTAGCTCGCTGACCGGGGAAAAAACTGTTGCATGTGAAAACGACGCCACACGAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGCCGCTNATGTTGTTGCAGGGGTTTGTTCGT]
[+] EMBL BX619637 [AAATCGGTAGCATATTTTATGCTAGAGATATTTCTGTTCCACCACCATTTTCTGCACAACACATGTTTGCAGAGTAATTCATTAACCGACGGAGTATCCCCGGTGGCACATGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATGACTGGCTTTGTTGTTTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTGGCGCCCAGATGTAGCTCGCTGACCGGGGAAAAAACTGTTGCATGTGAAAACGACGCCACACGAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGCCGCTNATGTTGTTGCAGGGGTTTGTTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2121#0 GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATT 60
consensus_2121#1 ------------------------------------------------------------
consensus_2121#0 CGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTT 120
consensus_2121#1 ------------------------------------------------------------
consensus_2121#0 GTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATA 180
consensus_2121#1 ------------------------------------------------------------
consensus_2121#0 AAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCAC 240
consensus_2121#1 -AAATCGGTAGCATATTTTA-TGCTAGAGATATTTCT-GTTCCACCACCATTTTCTGCAC 57
*** * * * ** * * ** * * * * *** * * *****
consensus_2121#0 GCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGG 300
consensus_2121#1 AACACA-TGTTTGCAGAGT---AATTCATTAACCG-ACGGAGTATC--CCCGGTGGCACA 110
** * * * ** * * **** * ** * * ** * **** *
consensus_2121#0 TGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGA 360
consensus_2121#1 TGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATG--ACTGGCTTTGT------TGT 162
** ** * ** * * ** * ** * * ** * **
consensus_2121#0 CGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAA-TTACGCCGAGTATGCCGAC 419
consensus_2121#1 TTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTG-GCGCCCA- 220
** ** *** * * * * ** * *** ** * * * *** *
consensus_2121#0 TGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAAT 479
consensus_2121#1 -GATGTAGCTCGCTGACCGGGGAA-----AAAACTGTTGCATGTGAAAACGACGCCACAC 274
*** * **** *** * * * *** *** * ** ****** * *
consensus_2121#0 CACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGT 539
consensus_2121#1 GAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGT---- 330
* * * *** *** ** * *** ** * * * * *
consensus_2121#0 TCGTTATAACATGCTAACTAAT-GCTTGAACAAATAAAATGAATCTATTTGTATAATTTT 598
consensus_2121#1 --GCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGC 388
* *** * * **** * *** ** * * * ** * * **
consensus_2121#0 AAC-AATATTGT-GCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCA 656
consensus_2121#1 CGCTNATGTTGTTGCAGGGGTTTGTTCGT------------------------------- 417
* ** **** *** * * * **
consensus_2121#0 ATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCT 716
consensus_2121#1 ------------------------------------------------------------
consensus_2121#0 AGAATAATTTTTTTCAATGGAAATAAAGNTATT 749
consensus_2121#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||