These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence [AGATNGCCCAGGGTTTTGAAGCTGACTGCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAGGCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCCCCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATTCCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATATTTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAAACACATTCCCGTGNAAAATAGACGGTACACTGGTATGGTACATGGGACGGGATTACCGNCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCCGGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGAATTTTGGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGATNGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGATGNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAAGTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCAANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCACGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAANCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNCAGNCACNAAGTAT] [+] EMBL AL695999 [AGATNGCCCAGGGTTTTGAAGCTGACTGCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAGGCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCCCCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATTCCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATATTTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAAACACATTCCCGTGNAAAATAGACGGTACACTGGTATGGTACATGGGACGGGATTACCGNCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCCGGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGAATTTTGGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGATNGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGATGNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAAGTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCAANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCACGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAANCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNCAGNCACNAAGTAT] consensusID : consensus_2128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACTGCCCGTGCACTCGGCATCGAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCGCAAGCCATGCCATCACGATTTATCTCGTGTGCAAGTACGGCCGCGACGACGGTCTCTATCCGAGCGAGCTGGTACGGCGGGCCCGGGTCCACACGGCACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGTTAAGTTTTCTGTTTGAACCGGTCATTTATTCGGGCAAATCGTACTTCCACTCCGATCGGATCGAACACATCCGGAAGGCGTACCGCTTGTTGGAGGATTCGCTCGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCAGCATTGCCACGCTGGTCGGTGTGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCACGGCCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGGGGCGCTCGAGCTGGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA] [+] EMBL AF515471 [AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACTGCCCGTGCACTCGGCATCGAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCGCAAGCCATGCCATCACGATTTATCTCGTGTGCAAGTACGGCCGCGACGACGGTCTCTATCCGAGCGAGCTGGTACGGCGGGCCCGGGTCCACACGGCACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGTTAAGTTTTCTGTTTGAACCGGTCATTTATTCGGGCAAATCGTACTTCCACTCCGATCGGATCGAACACATCCGGAAGGCGTACCGCTTGTTGGAGGATTCGCTCGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCAGCATTGCCACGCTGGTCGGTGTGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCACGGCCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGGGGCGCTCGAGCTGGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2128#0 ---------------------------------AGATNGCCCAGGGTTTTGAAGCTGACT 27 consensus_2128#1 AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACT 60 * * * * * *********** consensus_2128#0 GCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAA 87 consensus_2128#1 GCCCGTGCACTCGGCATC-GAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAA 119 ****************** ****** ********************************** consensus_2128#0 GCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGG 147 consensus_2128#1 GCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGG 179 ************************************************************ consensus_2128#0 TGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAG 207 consensus_2128#1 TGGCATCGTTATCACCGCAAGCCATGCCATCACGATTT-ATCTCGTGT--GCAAGTACGG 236 **************** ************** ***** ********* ******** * consensus_2128#0 GCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCC 267 consensus_2128#1 CCGCG-------ACGACGGTCTCT--AT-CCGAGCGAG--CTGGT---ACGGCGGG---C 278 **** ** * *** ** ******** **** ***** ** * consensus_2128#0 CCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATT 327 consensus_2128#1 CCGGGTCCACACGGC---------ACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGT- 328 ***** * *** * * **** *** * * ** ** * * consensus_2128#0 CCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATAT 387 consensus_2128#1 --TAAGTTTTCTG----TTTGAA---CCGGTCATTTATTCGGGCAAATCGTACTTC-CAC 378 ** ** * * * * ** * * ** * * ** ** * * consensus_2128#0 TTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAA 447 consensus_2128#1 TCCGATCGGATCG-AACACATCCGGAAGGCGTACCGC-TTGTTGGA-----GGATTCGCT 431 * *** * * *********** * * ** * * *** **** ** consensus_2128#0 ACACATTCCCGTGNAAAATAGACGGTACACTGGTA--TGGTACATGGGACGGGATTACCG 505 consensus_2128#1 -CGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCA 490 * * ** * * * ** * ** ** * * * ** ** consensus_2128#0 NCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCC 565 consensus_2128#1 GCATTGCCACGCTGGTCGGTG---TGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCA 547 * * *** ** * * * *** ***** * * * consensus_2128#0 GGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGA-ATTTT 624 consensus_2128#1 CGG--CCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGG 605 * *** ** ** * * ** ** * * * * ** * consensus_2128#0 GGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGAT 684 consensus_2128#1 GGCGCTCGAGCT---GGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA--- 659 *** * * *** ** * ** * * * *** ** * ** ** consensus_2128#0 NGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGAT 744 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 GNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAA 804 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 GTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCA 864 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 ANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCA 924 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 CGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAA 984 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 NCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNC 1044 consensus_2128#1 ------------------------------------------------------------ consensus_2128#0 AGNCACNAAGTAT 1057 consensus_2128#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||