These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTTAAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAACAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATATACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCACTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCCACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCCTGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACCGGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTATACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAGAGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTATGCCTTGGCTTCGGCAAGTATAATGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAAGTTATAGAAATCAAAACTGTC] [+] EMBL BM600427 [CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTTAAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAACAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATATACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCACTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCCACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCCTGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACCGGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTATACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAGAGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTATGCCTTGGCTTCGGCAAGTATAATGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAAGTTATAGAAATCAAAACTGTC] consensusID : consensus_2134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [CTCGACGGCAGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATAAGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATTTTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGCAACCAGCCGACATATCTAACCCATACATCAGACCTA] [+] EMBL BX469769 [CTCGACGGCAGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATAAGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATTTTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGCAACCAGCCGACATATCTAACCCATACATCAGACCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2134#0 CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTT 60 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 AAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAA 120 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 CAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATA 180 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 TACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCA 240 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 CTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCC 300 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 ACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCC 360 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 TGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACC 420 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 GGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTA 480 consensus_2134#1 ------------------------------------------------------------ consensus_2134#0 TACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAG 540 consensus_2134#1 --------------------------------------------------CTCGACG-GC 9 ** * * consensus_2134#0 AGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTA-TGCCTTGGCTTCGGCAAGTATA 599 consensus_2134#1 AGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATA 69 ** * ** * ******************** **** ***************** consensus_2134#0 A-TGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAA 658 consensus_2134#1 AGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAA 129 * ********************************************************** consensus_2134#0 ATGTAATGTAACCACCTATAGCCTAGAGAATCAA-GTTATAGAAATCAAAACTGTC---- 713 consensus_2134#1 ATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATT 189 ********************************** ********************* consensus_2134#0 ------------------------------------------------------------ consensus_2134#1 TTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGC 249 consensus_2134#0 ------------------------------------ consensus_2134#1 AACCAGCCGACATATCTAACCCATACATCAGACCTA 285 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||