cluster # 2138

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Anopheles gambiae
cluster # 2138 cluster # 2138 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2138#0 length = 721 sequences # 1

consensus_2138#1 length = 635 sequences # 1

consensusID : consensus_2138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [GCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTCTGCCTCATCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTACGCTGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGTGGAATACTCGAGCGCAACGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGCTTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAAGAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG]

[+] EMBL BX610022             [GCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTCTGCCTCATCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTACGCTGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGTGGAATACTCGAGCGCAACGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGCTTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAAGAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG]




>consensus_2138#0
GCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCC
TGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCAT
GTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCG
GTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGT
ACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTC
ACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAG
TACAAAGAAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTCT
GCCTCATCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGT
ACGCTGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGTGGAATACTCGAGCGC
AACGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATA
GCTTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGA
AAGAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGT
G

consensusID : consensus_2138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGATTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAACGAAGAGAACCTCCCATTACAGGACTTCGCATAAGGCTGTAGACGGCAGATAACATGGCGCTTGCAGCAAAATTAAGTATACAGATATACAATGTTTGCCAATCGCCCCGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT]

[+] EMBL BM636081             [CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGATTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAACGAAGAGAACCTCCCATTACAGGACTTCGCATAAGGCTGTAGACGGCAGATAACATGGCGCTTGCAGCAAAATTAAGTATACAGATATACAATGTTTGCCAATCGCCCCGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT]




>consensus_2138#1
CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGA
TTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGT
ACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGT
TTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTAT
CGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTG
TCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATAC
AGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATC
GTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAG
AAGAAAAACGAAGAGAACCTCCCATTACAGGACTTCGCATAAGGCTGTAGACGGCAGATA
ACATGGCGCTTGCAGCAAAATTAAGTATACAGATATACAATGTTTGCCAATCGCCCCGTC
CCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2138#0      ------------------------------------------------------------
consensus_2138#1      CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGA 60
                                                                                  

consensus_2138#0      -----------------------------------------------------GCAGCGT 7
consensus_2138#1      TTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGT 120
                                                                           *******

consensus_2138#0      ACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGT 67
consensus_2138#1      ACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGT 180
                      ************************************************************

consensus_2138#0      TTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTAT 127
consensus_2138#1      TTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTAT 240
                      ******************************* ****************************

consensus_2138#0      CGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTG 187
consensus_2138#1      CGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTG 300
                      ************************************************************

consensus_2138#0      TCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATAC 247
consensus_2138#1      TCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATAC 360
                      ************************************************************

consensus_2138#0      AGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATC 307
consensus_2138#1      AGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATC 420
                      ************************************************************

consensus_2138#0      GTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAG 367
consensus_2138#1      GTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAG 480
                      ************************************************************

consensus_2138#0      AAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTC-TGCCTCA 426
consensus_2138#1      AAGAAAAACGAAGAG-----AACCT-CCCATTACAGGACTTCGCATAAGGCTGTAGACGG 534
                      ******* *******     ** ** *   * **  *   ***    * *   *      

consensus_2138#0      TCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTAC--GC 484
consensus_2138#1      CAGATAACATGGCGCTTG-CA---GCAAAATTAAGTATACA---GATATACAATGTTTGC 587
                         ***    **  ***  **    ***  * *** *  **   ** ** ** *    **

consensus_2138#0      TGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGT--GGAATACTCGAGCGCAA 542
consensus_2138#1      CAATCGCCC-----CGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT------- 635
                        *** *       *** *** *   *    *  * * ***  * **  **         

consensus_2138#0      CGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGC 602
consensus_2138#1      ------------------------------------------------------------
                                                                                  

consensus_2138#0      TTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAA 662
consensus_2138#1      ------------------------------------------------------------
                                                                                  

consensus_2138#0      GAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG 721
consensus_2138#1      -----------------------------------------------------------