These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAATGATAAAACCAAGTGGCCGAACAACATCGTTTACTACACGATCGATACCACCGTTTACAACTCCGTTCACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAGCTGCATCCGGTTTGTACCGGGCACGACCCAGAATGGTTACATTTTCATTTCGGAAACTGACCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACCTGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTCGGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGCTGCCATAAGTACCGGGCAAAGAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGACGATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCAGTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG] [+] EMBL BX467314 [GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAATGATAAAACCAAGTGGCCGAACAACATCGTTTACTACACGATCGATACCACCGTTTACAACTCCGTTCACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAGCTGCATCCGGTTTGTACCGGGCACGACCCAGAATGGTTACATTTTCATTTCGGAAACTGACCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACCTGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTCGGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGCTGCCATAAGTACCGGGCAAAGAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGACGATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCAGTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG] consensusID : consensus_2140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAATGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAACCAACCCGGTTTTACCAAAACTCNCGGTTCAACCCAGAAACCAAGCAATTCCGCAACGGGCCAAATTGGATAAGGGATCGAAGCANGGTTGANGCTTGGATCCCGGGATTTAGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCACCGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAGAGCCTAACTAACTAGGGGAAACCAGAAAGCAAAACGCCCCGGTCAAACNCTGGTCCAAACCGGGAAAACGGGCGTAGGCACATTGTTCCCACCCGTCGCGCCACCCCAGTCTCCATACCCACCCGAACGCTT] [+] EMBL AL696165 [AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAATGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAACCAACCCGGTTTTACCAAAACTCNCGGTTCAACCCAGAAACCAAGCAATTCCGCAACGGGCCAAATTGGATAAGGGATCGAAGCANGGTTGANGCTTGGATCCCGGGATTTAGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCACCGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAGAGCCTAACTAACTAGGGGAAACCAGAAAGCAAAACGCCCCGGTCAAACNCTGGTCCAAACCGGGAAAACGGGCGTAGGCACATTGTTCCCACCCGTCGCGCCACCCCAGTCTCCATACCCACCCGAACGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2140#0 -----------GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGT 49 consensus_2140#1 AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGT 60 ** * * ** ********** ******************** consensus_2140#0 CTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTC 109 consensus_2140#1 CTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTC 120 ************************************************************ consensus_2140#0 TCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGA 169 consensus_2140#1 TCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGA 180 ************************************************************ consensus_2140#0 CATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAA 229 consensus_2140#1 CATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAA 240 ********************************** ************************* consensus_2140#0 TGATAAAACCAAGTG---GCCGAAC-AACA-TCGTTTACTACACGATCGATACCACCGTT 284 consensus_2140#1 TGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAAC- 299 ******** * * ** ******* **** ****** ** * *** * * consensus_2140#0 TACAACTCCGTTC-ACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAG 343 consensus_2140#1 --CAACCCGGTTTTACCAAAAC-----TCNCGGTTCAACCCA-GAAACCAAGCAATTCCG 351 **** * *** **** *** ** * *** * * * **** * * consensus_2140#0 CTGCAT-CCGGTTTGTACCGGGCACGACCCAGAATGGTT-ACATTTTCATTTCGGAAACT 401 consensus_2140#1 CAACGGGCCAAATTGGATAAGGGAT--CGAAGCANGGTTGANGCTTGGATCCCGGGATTT 409 * * ** *** * ** * * ** * **** * ** ** *** * * consensus_2140#0 GA--CCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACC 459 consensus_2140#1 AGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCAC 469 **** ** ** * ** * * * ** * consensus_2140#0 TGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTC 519 consensus_2140#1 CGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAG 529 * * ** ** ** * ** * * * * ** * * * consensus_2140#0 GGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGC 579 consensus_2140#1 AGCCTAACTAAC---TAGGGGAAACCAGAAAGCAAAACGCCCCGG----TCAAACNCTGG 582 * * * * * ** * * ** ** * * ** * * *** * consensus_2140#0 TGCCATAAGTACCGGGCAAA-GAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGAC 638 consensus_2140#1 TCCAA-----ACCGGGAAAACGGGCGTAGGCACA-TTGTTCCCACCCGTCG-CGCC--AC 633 * * * ****** *** * ** * ** * * * * * *** ** * ** consensus_2140#0 GATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCA 698 consensus_2140#1 CCCAGTCTCCATACCCACCCGAACGCTT-------------------------------- 661 * ******** ** * consensus_2140#0 GTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG 753 consensus_2140#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||