cluster # 2156

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Anopheles gambiae
cluster # 2156 cluster # 2156 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2156#0 length = 637 sequences # 1

consensus_2156#1 length = 565 sequences # 1

consensusID : consensus_2156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACACCTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACGCATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTTGCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAATATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATACTCACACCACAACGTAGTAGTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTTCGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAGAGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACGGGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGCCTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC]

[+] EMBL BX467931             [GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACACCTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACGCATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTTGCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAATATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATACTCACACCACAACGTAGTAGTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTTCGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAGAGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACGGGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGCCTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC]




>consensus_2156#0
GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCT
CATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACAC
CTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACG
CATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTT
GCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAA
TATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATA
CTCACACCACAACGTAGTAGTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTTC
GGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAGA
GTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACGG
GAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGCC
TTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC

consensusID : consensus_2156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAGCTGCAGGAGATCCGTGAAGGCGAAGCTGGCCCGACTGATCTGCGACAACACTGACCTGATCGATACCGTGCAAATCTACCCGATGGTGTTGCCGGATCACGAAATCAACCCCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGGGCCGACTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTGCCGGAGACGATCGGATTCAAGTAGAGTGTGGCACCCATCACCCAACTGGCACCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTCCGGAACTGTTCCTTCCCTTCGAGCCTGGGAGCGTTGATGGCGTAGAAGTACACGATGACCCGGAGATAACCGAAGTGTCACCCGTTCGTGCTGAGGACTCGTATCCCCTTTAAATGGTAGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACA]

[+] EMBL AL696303             [GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAGCTGCAGGAGATCCGTGAAGGCGAAGCTGGCCCGACTGATCTGCGACAACACTGACCTGATCGATACCGTGCAAATCTACCCGATGGTGTTGCCGGATCACGAAATCAACCCCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGGGCCGACTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTGCCGGAGACGATCGGATTCAAGTAGAGTGTGGCACCCATCACCCAACTGGCACCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTCCGGAACTGTTCCTTCCCTTCGAGCCTGGGAGCGTTGATGGCGTAGAAGTACACGATGACCCGGAGATAACCGAAGTGTCACCCGTTCGTGCTGAGGACTCGTATCCCCTTTAAATGGTAGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACA]




>consensus_2156#1
GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAGCTGCAGGAGATCCGTGAAGGC
GAAGCTGGCCCGACTGATCTGCGACAACACTGACCTGATCGATACCGTGCAAATCTACCC
GATGGTGTTGCCGGATCACGAAATCAACCCCCGAGTGCCATGCAAGAGCGGTATCCTTCC
ATCAATCGATCTGACAAAGTGGGCCGACTACGGTCACGAAACTCACTCGCCGCATCAGTA
TCAATTCCTGAACGAGCTGCCGGAGACGATCGGATTCAAGTAGAGTGTGGCACCCATCAC
CCAACTGGCACCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTC
CCGTCTTCCGGAACTGTTCCTTCCCTTCGAGCCTGGGAGCGTTGATGGCGTAGAAGTACA
CGATGACCCGGAGATAACCGAAGTGTCACCCGTTCGTGCTGAGGACTCGTATCCCCTTTA
AATGGTAGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCTCTACTTCA
TCCCGCTGTCTCATTGTATTATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2156#0      GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCT 60
consensus_2156#1      ---------------------GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAG 39
                                            * *  ** *          ** *****  ***  *   

consensus_2156#0      CATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACAC 120
consensus_2156#1      C--TGCAGGAGATCCGT--GAAG------GCGAAGCTGGCCCGACTGATCTGCGACA-AC 88
                      *  ** *  * *  * *   ***       **** *   ***  *    **   *** **

consensus_2156#0      CTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACG 180
consensus_2156#1      ACTGACCTGATCG-ATACCGTGCAAATCTACCCGATGGTGTTGC---CGGATCACGAAAT 144
                        *   **  *** * *  **   * * *  *     ** ** *    *   ** ***  

consensus_2156#0      CATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTT 240
consensus_2156#1      CAACC--CCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGG 202
                      **     **   * ***         * *         *     *  *   ***  *   

consensus_2156#0      GCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAA 300
consensus_2156#1      GCCGA-CTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTG-- 259
                      ****  * **  ** *  *   * * **  **     *  **  * *    ** *  *  

consensus_2156#0      TATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATA 360
consensus_2156#1      ---CCGG-AGACGATCGGATTCAAGTAG----AGTGTGGCACCCATCACC-CAACTGGCA 310
                         ****  *** * *    **  *        ** *  *******  *  *   *   *

consensus_2156#0      CTCACACCACAACGTAGTA-GTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTT 419
consensus_2156#1      CCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTC-- 368
                      * * **  * * *** *** *  *      ***  *** *   **    *   *****  

consensus_2156#0      CGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAG 479
consensus_2156#1      CGGAACTGTTCCTTCCCTTCGAGCC-TGGGAGCGTTGATGGCGTAGAAGTACACG---AT 424
                      **** * **      *  ** **     * **      * *     * *  ****   * 

consensus_2156#0      AGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACG 539
consensus_2156#1      GACCCGGAGATAACCGAAG--TGTCACCCGTTCG---------TGCTGAGGACTCGTATC 473
                          ** *    **  ***  *  **  **  **         **  *     * * *  

consensus_2156#0      GGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGC 599
consensus_2156#1      CCCTTTAAATGGT-AGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCT 532
                          ** *** ** * **** **  *** **   ** * *       *  *   *     

consensus_2156#0      CTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC 637
consensus_2156#1      CTACTTCATCCCGCTGTCTCATTGTATTATACA----- 565
                      **       *  ** *       *