These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACACCTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACGCATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTTGCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAATATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATACTCACACCACAACGTAGTAGTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTTCGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAGAGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACGGGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGCCTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC] [+] EMBL BX467931 [GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACACCTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACGCATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTTGCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAATATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATACTCACACCACAACGTAGTAGTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTTCGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAGAGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACGGGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGCCTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC] consensusID : consensus_2156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAGCTGCAGGAGATCCGTGAAGGCGAAGCTGGCCCGACTGATCTGCGACAACACTGACCTGATCGATACCGTGCAAATCTACCCGATGGTGTTGCCGGATCACGAAATCAACCCCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGGGCCGACTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTGCCGGAGACGATCGGATTCAAGTAGAGTGTGGCACCCATCACCCAACTGGCACCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTCCGGAACTGTTCCTTCCCTTCGAGCCTGGGAGCGTTGATGGCGTAGAAGTACACGATGACCCGGAGATAACCGAAGTGTCACCCGTTCGTGCTGAGGACTCGTATCCCCTTTAAATGGTAGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACA] [+] EMBL AL696303 [GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAGCTGCAGGAGATCCGTGAAGGCGAAGCTGGCCCGACTGATCTGCGACAACACTGACCTGATCGATACCGTGCAAATCTACCCGATGGTGTTGCCGGATCACGAAATCAACCCCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGGGCCGACTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTGCCGGAGACGATCGGATTCAAGTAGAGTGTGGCACCCATCACCCAACTGGCACCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTCCGGAACTGTTCCTTCCCTTCGAGCCTGGGAGCGTTGATGGCGTAGAAGTACACGATGACCCGGAGATAACCGAAGTGTCACCCGTTCGTGCTGAGGACTCGTATCCCCTTTAAATGGTAGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCTCATTGTATTATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2156#0 GCAGAATCCGCACGANTGCTACACCTTCAACCTTTCCATCTCTACTTCATCCCGCTGTCT 60 consensus_2156#1 ---------------------GATCGCCAGCAGGNNTCATCCTCCTTCACGCCGGAGCAG 39 * * ** * ** ***** *** * consensus_2156#0 CATTGTATTATACACATTTCAAGTTTGTTTCGAATCGCCCCCACCCTCCCTCTCACACAC 120 consensus_2156#1 C--TGCAGGAGATCCGT--GAAG------GCGAAGCTGGCCCGACTGATCTGCGACA-AC 88 * ** * * * * * *** **** * *** * ** *** ** consensus_2156#0 CTTCTTCTCCTCGTACATTGTTACACTTTTGCGAGCAGTCTTACGAATGCTCCAGGAACG 180 consensus_2156#1 ACTGACCTGATCG-ATACCGTGCAAATCTACCCGATGGTGTTGC---CGGATCACGAAAT 144 * ** *** * * ** * * * * ** ** * * ** *** consensus_2156#0 CATTTAGCCGAGGCGCCGCCTCGACACAGCTAGACAATAGTGGCCATTAGCACAGTGGTT 240 consensus_2156#1 CAACC--CCCGAGTGCCATGCAAGAGCGGTATCCTTCCATCAATCGATCTGACAAAGTGG 202 ** ** * *** * * * * * *** * consensus_2156#0 GCCGCTCCACACTCCCTGAGAGCTCCCGGAGCTCTCCTTACAGGTGCGCTGCGCGTCGAA 300 consensus_2156#1 GCCGA-CTACGGTCACGAAACTCACTCGCCGCATCAGTATCAATTCCTGAACGAGCTG-- 259 **** * ** ** * * * * ** ** * ** * * ** * * consensus_2156#0 TATCCGGCGGACTAACCCTCTCCGGCGCTCGCTGTCTTTCACCCATTCCTACCGNTCATA 360 consensus_2156#1 ---CCGG-AGACGATCGGATTCAAGTAG----AGTGTGGCACCCATCACC-CAACTGGCA 310 **** *** * * ** * ** * ******* * * * * consensus_2156#0 CTCACACCACAACGTAGTA-GTAGTAGCAGTAGTCGTAGTAGCAAGTACCATATCTTCTT 419 consensus_2156#1 CCCGCAAGAAACCGTTGTACGCTGAGATTCTAGATGTATTGTTAATCCTCCCGTCTTC-- 368 * * ** * * *** *** * * *** *** * ** * ***** consensus_2156#0 CGGAGCAGTCATCCACGATCAAGATACAGTAGTAAGAGTAGTCCCAACGANCACGGGAAG 479 consensus_2156#1 CGGAACTGTTCCTTCCCTTCGAGCC-TGGGAGCGTTGATGGCGTAGAAGTACACG---AT 424 **** * ** * ** ** * ** * * * * **** * consensus_2156#0 AGTGCGAACGGTACAAAAGATTACCATTCGGNCGACGGGGAATTGGGGGAAGGTTGAACG 539 consensus_2156#1 GACCCGGAGATAACCGAAG--TGTCACCCGTTCG---------TGCTGAGGACTCGTATC 473 ** * ** *** * ** ** ** ** * * * * consensus_2156#0 GGAGTTGAATTGTTAACCATTGTCACCCGGGGAGACATTTAGGGAGAAGGCCGGCAGGGC 599 consensus_2156#1 CCCTTTAAATGGT-AGCCATCGTATCCCAGGCTCACCTCTCACCTTCAACCTTTCCATCT 532 ** *** ** * **** ** *** ** ** * * * * * consensus_2156#0 CTTAAATGGCAAGCGGCGGAGGAGNTCCCNGAGTTTCC 637 consensus_2156#1 CTACTTCATCCCGCTGTCTCATTGTATTATACA----- 565 ** * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||