These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [ATCGCCAGAGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAAGAGAGTAAGGTACCAAAGAAAAATTGTTGGAAAGGAGGTGCATGCCGAAATAATTTTTCTTTATGCCAAATTCGGACAAGTATGTACAATGGGCCTCCATGGTGCAAAAAAATTTTTGCACCATGAGATGTATTCGCTCGCAGACGGCTGCTTGTGCGAAATGCTCTGAAAGTGGGATCGTTAATAGAACTGTGTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCAACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGGTGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCGTTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAGCGGCTGTTTCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGACGTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC] [+] EMBL AL696356 [ATCGCCAGAGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAAGAGAGTAAGGTACCAAAGAAAAATTGTTGGAAAGGAGGTGCATGCCGAAATAATTTTTCTTTATGCCAAATTCGGACAAGTATGTACAATGGGCCTCCATGGTGCAAAAAAATTTTTGCACCATGAGATGTATTCGCTCGCAGACGGCTGCTTGTGCGAAATGCTCTGAAAGTGGGATCGTTAATAGAACTGTGTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCAACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGGTGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCGTTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAGCGGCTGTTTCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGACGTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC] consensusID : consensus_2163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [AGAATCGCCAGCCAGGTTTANTGCGAAGTTGAACAGTCGCCGCTATAGAGTATCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCCGTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCATGGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGACGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGTGTAAGAGCAGATTCTTCACATTATTGNTACCGTGCCGAATNTCACTTGGCTCCGATATAACTGAGCTANCAAATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGGACCCGGAATTCTCTGTCCTAGGNAACAGGCCTCGATCCCCATCTCCCGCGTANATAAGTTCNGGTCCAAGCACCCTTGTGAATATGATGANACTTAGGGCGTTCGGTCTTNATTTACCGGTAAAGATTGTGTGATTGTGGGGAAACCGAAAATTATATGTGGAATGTAGCGAGNTNTCGGCAAAAATTCACCAAGCNCCA] [+] EMBL AL696330 [AGAATCGCCAGCCAGGTTTANTGCGAAGTTGAACAGTCGCCGCTATAGAGTATCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCCGTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCATGGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGACGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGTGTAAGAGCAGATTCTTCACATTATTGNTACCGTGCCGAATNTCACTTGGCTCCGATATAACTGAGCTANCAAATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGGACCCGGAATTCTCTGTCCTAGGNAACAGGCCTCGATCCCCATCTCCCGCGTANATAAGTTCNGGTCCAAGCACCCTTGTGAATATGATGANACTTAGGGCGTTCGGTCTTNATTTACCGGTAAAGATTGTGTGATTGTGGGGAAACCGAAAATTATATGTGGAATGTAGCGAGNTNTCGGCAAAAATTCACCAAGCNCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2163#0 ---ATCGCCAG---AGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACT 54 consensus_2163#1 AGAATCGCCAGCCAGGTTTANTGCGAAGTTG-AACAGTCGCCGCTATAGAGTATC-GACT 58 ******** * *** ********** *********************** **** consensus_2163#0 GTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTT 114 consensus_2163#1 GTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTT 118 ************************************************************ consensus_2163#0 AGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTG 174 consensus_2163#1 AGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTG 178 ************************************************************ consensus_2163#0 AACGTGGAA-GAGAGTAAGGTACCAAA-GAAAAATTGTTGGAA--AGGAGGTGCATGCCG 230 consensus_2163#1 AACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCC 238 ********* ***************** *********** * * ************** consensus_2163#0 --AAATAATTTT--TCTTTATGCC--AAATTCGGACAAG-TATGTACAATGGGCCTCCAT 283 consensus_2163#1 GTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCAT 298 * *** * * *** ****** * ******** * ********* ** * **** consensus_2163#0 GGTGCAAAAAAATTTTTGCACCATGAGAT------------------GTATTCGC--TCG 323 consensus_2163#1 GGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGA 358 ***** *** ** *** * ** * * ****** * consensus_2163#0 CAGACGGCTGCTTGTGCGAAATGCTC--TGAAAGTGGGAT-----CGTTAATAGAACTGT 376 consensus_2163#1 CGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGT 418 * ** **** ** * * *** *** ******* * *********** consensus_2163#0 GTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCA 436 consensus_2163#1 GTAAGAGC----AGATTCTTCACATTATTGNTACCGTGCCGAATNTC--------ACTTG 466 **** ** * ** * **** ** * * * ** * * consensus_2163#0 ACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGG 496 consensus_2163#1 GCTCCGATATAACTGAGCTANCA--AATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGG 524 ** * * **** * ** * * * * * * ***** * * * ** consensus_2163#0 TGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCG 556 consensus_2163#1 -----ACCCGGAATTCTCT--GTCCTAGGNAACAGGCCTCGAT---CCCCATCTCCCGCG 574 * ** **** * * * * * ** * * ** ***** * * *** consensus_2163#0 TTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAG 616 consensus_2163#1 TAN------ATAAGTTCNGGTC-CAAGCACCCTTGTGAATATGATGANACTTAGGGCGTT 627 * *** *** * * * * * * ** ** * **** * consensus_2163#0 CGGCTGTT-TCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGAC 675 consensus_2163#1 CGGTCTTNATTTACCGGTAAAGATTGTGT----GATTGTGGGGAAAC-----CGAAAATT 678 *** * * * * *** ** * * **** * ** * ** * consensus_2163#0 GTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC 731 consensus_2163#1 ATATGTGGA-ATGTAGCGAGNTNTCGGCAAAAATT-CACCAAGCNCCA-------- 724 *** * * * * * * ** *** ** *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||