These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCACTAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATATATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTGAGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGAGTACAACTGAACAAGAAGTTGAATTTTCCGAATCGATCCGAACTCTCCTCGCTTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAATCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGTTCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCGAGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTACCCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA] [+] EMBL BM576720 [CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCACTAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATATATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTGAGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGAGTACAACTGAACAAGAAGTTGAATTTTCCGAATCGATCCGAACTCTCCTCGCTTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAATCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGTTCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCGAGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTACCCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA] consensusID : consensus_2169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGAGTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGCTTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAATCC] [+] EMBL BX617888 [GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGAGTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGCTTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2169#0 CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCAC 60 consensus_2169#1 ------------------------------------------------------------ consensus_2169#0 TAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATA 120 consensus_2169#1 ------------------------------------------------------------ consensus_2169#0 TATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTG 180 consensus_2169#1 ------------------------------------------------------------ consensus_2169#0 AGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGA 240 consensus_2169#1 ----------------------GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGA 38 ******************** ** ******* ***** consensus_2169#0 GTACAACTGAACAAGAAGTTGAATTTTC------CGAATCGATCCGA--ACTCTCCTCGC 292 consensus_2169#1 GTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGC 98 ************************* * * *** **** *********** consensus_2169#0 TTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAA 352 consensus_2169#1 TTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAA 158 ******************** ********** ******************** ******* consensus_2169#0 TCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGT 412 consensus_2169#1 TCC--------------------------------------------------------- 161 *** consensus_2169#0 TCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCG 472 consensus_2169#1 ------------------------------------------------------------ consensus_2169#0 AGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTAC 532 consensus_2169#1 ------------------------------------------------------------ consensus_2169#0 CCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA 586 consensus_2169#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||