cluster # 2179

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Anopheles gambiae
cluster # 2179 cluster # 2179 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2179#0 length = 741 sequences # 1

consensus_2179#1 length = 396 sequences # 1

consensusID : consensus_2179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 741
fasta sequence

                              [GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCATTGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGAATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCATCATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCTCCACTTCCGCATGTACCGGGAGATCGCGGAGCTGTGGGAGTCGGAAGCGCACGGTACGATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCGGCGAAAATGGCCTCTTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCACCAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCCTGCTGACCGTCCCGCAAGCGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGCACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAACGGACGGGATGATTGAAACGCTCGT]

[+] EMBL BX602075             [GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCATTGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGAATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCATCATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCTCCACTTCCGCATGTACCGGGAGATCGCGGAGCTGTGGGAGTCGGAAGCGCACGGTACGATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCGGCGAAAATGGCCTCTTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCACCAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCCTGCTGACCGTCCCGCAAGCGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGCACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAACGGACGGGATGATTGAAACGCTCGT]




>consensus_2179#0
GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCAT
TGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGA
ATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCAT
CATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCT
CCACTTCCGCATGTACCGGGAGATCGCGGAGCTGTGGGAGTCGGAAGCGCACGGTACGAT
CGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCGGCGAAAATGGCCTCTTC
CTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAAC
CAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCG
CCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCACCAA
CGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCCTGCTGACCGTCCCGCAAGCGCT
CATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGCACTA
CATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAACGGA
CGGGATGATTGAAACGCTCGT

consensusID : consensus_2179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCGCAATGGACGCGTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACGAGCCGCAGCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAAGCACTGGCCGCATCCGAGAAGGGACAGGGCNATGTGAATCCTTCACCGAGCAGCAGCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNACCAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT]

[+] EMBL BX626085             [CCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCGCAATGGACGCGTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACGAGCCGCAGCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAAGCACTGGCCGCATCCGAGAAGGGACAGGGCNATGTGAATCCTTCACCGAGCAGCAGCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNACCAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT]




>consensus_2179#1
CCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCGCAA
TGGACGCGTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCG
CAACGAGCCGCAGCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAAGCA
CTGGCCGCATCCGAGAAGGGACAGGGCNATGTGAATCCTTCACCGAGCAGCAGCAGCAGC
AGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCG
AGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNACCAACGTTGCT
ACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2179#0      GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCAT 60
consensus_2179#1      ------------------------------------------------------------
                                                                                  

consensus_2179#0      TGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGA 120
consensus_2179#1      ------------------------------------------------------------
                                                                                  

consensus_2179#0      ATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCAT 180
consensus_2179#1      -------------------------------------------------CCGTGTACTGC 11
                                                                       * ***  *   

consensus_2179#0      CATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCT 240
consensus_2179#1      CATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTA--ACCAGCGCAATG-GACGC- 67
                      ****  ** *  * *    *  **   *   ***  * *  **   ***   * * *** 

consensus_2179#0      CCACTTCCGCATGTACCGGGAGATCGCGGAGCTG--TGGGAGTCGGAAGCGCACGGTACG 298
consensus_2179#1      --GTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACG 125
                          ** * ** *   *** * * *     ***   *   * ** ** **   **  ***

consensus_2179#0      ATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCG-GCGAAAATGGCCTC 357
consensus_2179#1      AGCCGCA-GCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAA--GCACT 182
                      * *     *    **  **  *   *** * *  ** *   * **  **  **  **   

consensus_2179#0      TTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACT 417
consensus_2179#1      GGCCGCATC---CGAGAAGGGACAG-GGCNATGTGAATCCTTCACCGAGCAGCAG----- 233
                        ** ** *   ** * *  * **  *** *   * * *   *   * ****  *     

consensus_2179#0      AACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACAT 477
consensus_2179#1      ---CAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACAT 290
                         *********************************************************

consensus_2179#0      TCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCAC 537
consensus_2179#1      TCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNAC 350
                      ********************************************************* **

consensus_2179#0      CAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCC-TGCTGACCGTCCCGCAAG 596
consensus_2179#1      CAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT-------------- 396
                      ****************** *********** ** ******* ****              

consensus_2179#0      CGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGC 656
consensus_2179#1      ------------------------------------------------------------
                                                                                  

consensus_2179#0      ACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAA 716
consensus_2179#1      ------------------------------------------------------------
                                                                                  

consensus_2179#0      CGGACGGGATGATTGAAACGCTCGT 741
consensus_2179#1      -------------------------