These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATATTATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTGCGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCTTATGGTCTTTTCTGATGTGGATAATGATACAGGGTTTACCTAGCCAATCCAGCCATCGTAAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCACTTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTGATCGCATACTTCTTGGTCGCAAACTTCTGGATCGCATACTTCTTGGTCGCAAAGTTCTTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT] [+] EMBL BX602215 [AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATATTATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTGCGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCTTATGGTCTTTTCTGATGTGGATAATGATACAGGGTTTACCTAGCCAATCCAGCCATCGTAAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCACTTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTGATCGCATACTTCTTGGTCGCAAACTTCTGGATCGCATACTTCTTGGTCGCAAAGTTCTTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT] consensusID : consensus_2190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGATTGCGACCAATAAGATTGCGACCAAGACTTTGGCGACCAAGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTTTGCGACCAAGAATTATGCGACCAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAAGACTTTTGCAACCAAGAATTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAAAATTTTGCGACCAAGAAGTTTGCGACCAGGAAGTTTGCGACCAAGAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCAACAACTCATCAGATACCTAGACTCAAGAAATAGATTATAGAAA] [+] EMBL BX605155 [AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGATTGCGACCAATAAGATTGCGACCAAGACTTTGGCGACCAAGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTTTGCGACCAAGAATTATGCGACCAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAAGACTTTTGCAACCAAGAATTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAAAATTTTGCGACCAAGAAGTTTGCGACCAGGAAGTTTGCGACCAAGAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCAACAACTCATCAGATACCTAGACTCAAGAAATAGATTATAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2190#0 AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATAT 60 consensus_2190#1 ------------------------AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGT 36 ** ** * * ** * ** * * consensus_2190#0 TATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTG 120 consensus_2190#1 T-TGCGACCAAGAAGATTGCGACC---AATAAG-ATTGCGACCAAGACTTTGGC-GACCA 90 * ** * ** *** * * ** ** **** * ******* * consensus_2190#0 CGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCT 180 consensus_2190#1 AGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTT-TGCGACCAAGAATTAT-GCGAC 148 * **** *** * * * ** ** * *** ** * * consensus_2190#0 TATGGTCTTTTCTGATGTGGATAATG-ATACAGGGTTTACCTAGCCAATCCAGCCATCGT 239 consensus_2190#1 CAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAA---GACTTTTGC 205 * *** * * ** ** *** * ** **** * * * consensus_2190#0 AAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCAC 299 consensus_2190#1 AACCAAGAATTTTGCGACCAAGAA-----GTTTGCGACCAAGAAGTTTGCGACCAAGAAG 260 ** * ** * ** ** ** * * ** * * * * consensus_2190#0 TTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTG 359 consensus_2190#1 TTTGCGACCAA---AAATTTTGCGACCAA-GAAGTTTGCGACCAGGAAGTTTGCGACCAA 316 *** * * * *** ** ** * * ** * * * * consensus_2190#0 ATCGCATACTTCTTGGTCGCAAACTTCTGG--ATCGCATACTTCTTGGTCGCAAAGTTC- 416 consensus_2190#1 GAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCA 376 * * * * * *** * * * ** * ** ** * *** ** consensus_2190#0 -TTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT 459 consensus_2190#1 ACAACTCATCAGATACCTAGACTCA-AGAAATAGATTATAGAAA 419 ** * * * * * * ** * * *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||