cluster # 2197

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2197 cluster # 2197 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2197#0 length = 950 sequences # 1

consensus_2197#1 length = 449 sequences # 1

consensusID : consensus_2197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 950
fasta sequence

                              [AGCAGAATTCCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGCATTGTGTGAACTGCAAGAATAGTTTAAACAATTTCGTCCATCATGAAAGACTACGTAGGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGTAACACACGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGGACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAGCCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCTTAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTTTNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGTGGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGTAAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACANCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTNTNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAAAGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNANGGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA]

[+] EMBL AL696477             [AGCAGAATTCCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGCATTGTGTGAACTGCAAGAATAGTTTAAACAATTTCGTCCATCATGAAAGACTACGTAGGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGTAACACACGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGGACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAGCCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCTTAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTTTNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGTGGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGTAAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACANCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTNTNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAAAGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNANGGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA]




>consensus_2197#0
AGCAGAATTCCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGCA
TTGTGTGAACTGCAAGAATAGTTTAAACAATTTCGTCCATCATGAAAGACTACGTAGGAT
TATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAA
ATTCCCGCATAGTTAATGGATTAAATGCCGTAACACACGTACAACGCGTATGTGCTGTAT
CTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATG
TGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGGACCT
AGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAGCCAG
TGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCTTAAA
CGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTTTNAC
CGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGTGGTG
AGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGTAAAA
GNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACANCAA
CCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTNTNCC
CCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAAAGAA
GAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNANGGAT
TATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA

consensusID : consensus_2197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGCATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGCTTCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAACATTGCGGGCTTCGTTCGGTGGGAAGTTGGACTAGGAGCACCGTGTTTGGGCAGCTAAATATTCAAATCTCTAGCCAGGCCGTCGCACATCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT]

[+] EMBL AL932428             [GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGCATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGCTTCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAACATTGCGGGCTTCGTTCGGTGGGAAGTTGGACTAGGAGCACCGTGTTTGGGCAGCTAAATATTCAAATCTCTAGCCAGGCCGTCGCACATCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT]




>consensus_2197#1
GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGCA
TTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAGAT
TATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAA
ATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCTGT
ATCTGAACTCTGCCAACTCTGGCTTCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATG
TGCTGACCGCGGCACAAAACATTGCGGGCTTCGTTCGGTGGGAAGTTGGACTAGGAGCAC
CGTGTTTGGGCAGCTAAATATTCAAATCTCTAGCCAGGCCGTCGCACATCCTATTTCAAT
ATGGCAAATCGGGCTAACGATATTGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2197#0      AGCAGAATT-CCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGC 59
consensus_2197#1      -GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGC 59
                       *******  ***   *   **** **************** ************** ***

consensus_2197#0      ATTGTGTGAACTGCAAGAATAGTTTAAACAA-TTTCGTCCATCATGAAAGACTACGTAGG 118
consensus_2197#1      ATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAG- 118
                      ******************************* *************************** 

consensus_2197#0      ATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCG 178
consensus_2197#1      ATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCG 178
                      ************************************************************

consensus_2197#0      AAATTCCCGCATAGTTAATGGATTAAATGCCG-TAACACAC-GTACAACGCGTATGTGCT 236
consensus_2197#1      AAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCT 238
                      ******************************** ******** ******************

consensus_2197#0      GTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGT 296
consensus_2197#1      GTATCTGAACTCTGCCAACTCTGG--CTTCTTCGGTGGAGGATCGCTGATCTCTGATCGT 296
                      ************************    ********************************

consensus_2197#0      CATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGG 356
consensus_2197#1      CATGTGCTGACCGCGGCACAAA--ACATTGC-GGGCT-TCGTTCG--GTGGGAAGTT-GG 349
                      **********************  ******* ***** *******   ********* **

consensus_2197#0      ACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAG 416
consensus_2197#1      ACTAGGAGCACC------GTGTTT---GGGCAGCTAAATA-----TTCAAATCTC--TAG 393
                      **   * *  **      *****    ** ******** *     *********   ***

consensus_2197#0      CCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCT 476
consensus_2197#1      CCAG-GCCGTCG-CACA--TCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT 449
                      **** ******* ****  *****   *  *    *  *  ****  *  **   **  *

consensus_2197#0      TAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTT 536
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      TNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGT 596
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      GGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGT 656
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      AAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACA 716
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      NCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTN 776
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      TNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAA 836
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      AGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNAN 896
consensus_2197#1      ------------------------------------------------------------
                                                                                  

consensus_2197#0      GGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA 950
consensus_2197#1      ------------------------------------------------------