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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CCGCCCACGCGTCCGAGGACCCGTCCTGGACGCACACAAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCAATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATTTCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACATCATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGACACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACTGTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCACACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTTTCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTATTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACATCCATGTATTGCTCGTTGTAAACTCGTATACATTACTACCACGATTTAAAAAAAAACATGTGAAAGGCACAGCTAAATGATGATACTGATGATGATGAAGAGAATTTAATGCATTGAAATATTTATATAT]
[+] EMBL BM604922 [CCGCCCACGCGTCCGAGGACCCGTCCTGGACGCACACAAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCAATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATTTCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACATCATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGACACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACTGTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCACACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTTTCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTATTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACATCCATGTATTGCTCGTTGTAAACTCGTATACATTACTACCACGATTTAAAAAAAAACATGTGAAAGGCACAGCTAAATGATGATACTGATGATGATGAAGAGAATTTAATGCATTGAAATATTTATATAT]
consensusID : consensus_220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTTTTGAGAGAAAGGACCCGTCCTGGACGCACACAAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCAATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATTTCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACATCATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGACACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACTGTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCACACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTTTCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTATTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACATCCATGTATTGGCTCGTTGTAACTCGTATACA]
[+] EMBL BM590059 [CCGCGGACGCGTGGGCGGACGCGTGGGTTTTGAGAGAAAGGACCCGTCCTGGACGCACACAAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCAATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATTTCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACATCATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGACACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACTGTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCACACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTTTCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTATTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACATCCATGTATTGGCTCGTTGTAACTCGTATACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_220#0 -----------------------CCGCCCACGCGTCCGAGGACCCGTCCTGGACGCACAC 37
consensus_220#1 CCGCGGACGCGTGGGCGGACGCGTGGGTTTTGAGAGAAAGGACCCGTCCTGGACGCACAC 60
* * * **********************
consensus_220#0 AAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCA 97
consensus_220#1 AAAAAAAAACATGCACAACATGTCCCAAGGCTCACGAAATACCGGATACTACAAAAATCA 120
************************************************************
consensus_220#0 ATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATT 157
consensus_220#1 ATGTACCATATGTGTTAATTATTATTGTACTTACCAATTATTGTAACGCAACTAATCATT 180
************************************************************
consensus_220#0 TCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACAT 217
consensus_220#1 TCTAACGATACACAAGCAAGAATCAAAGAAAACCCCTTTTTCCCCATTGATGAGGCACAT 240
************************************************************
consensus_220#0 CATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGA 277
consensus_220#1 CATACAGCGCTGCTTTTGATAGAACTCGCTGCTCCAGGGCATCTCCCGCAAAACGGATGA 300
************************************************************
consensus_220#0 CACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACT 337
consensus_220#1 CACGACATGAGTAGCAATTCCATCTTACCTTTCACCGCTTTGTCTAAGTTGCACCGCACT 360
************************************************************
consensus_220#0 GTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCA 397
consensus_220#1 GTTGTTTTAGGATAAAATGGAGAGGTACATTGGCAGGTTTGGAAGTCACGCTTAGGCTCA 420
************************************************************
consensus_220#0 CACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTT 457
consensus_220#1 CACATTAAGCATTTGCGTGTCTTTCGAATAGCTGCCGTTACGTTCGGTGGACATTTCGTT 480
************************************************************
consensus_220#0 TCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTA 517
consensus_220#1 TCGTCAGTACCACTATGCAGCACAAACAGTTTTCAACAAACGAGGCGGTTAATTGCTGTA 540
************************************************************
consensus_220#0 TTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACA 577
consensus_220#1 TTGCTCTTCTTACTACTACTCACTTTTCTAGACGTTGAATGGCTACCATTGCAGAAGACA 600
************************************************************
consensus_220#0 TCCATGTATTG-CTCGTTGTAAACTCGTATACATTACTACCACGATTTAAAAAAAAACAT 636
consensus_220#1 TCCATGTATTGGCTCGTTGTAA-CTCGTATACA--------------------------- 632
*********** ********** **********
consensus_220#0 GTGAAAGGCACAGCTAAATGATGATACTGATGATGATGAAGAGAATTTAATGCATTGAAA 696
consensus_220#1 ------------------------------------------------------------
consensus_220#0 TATTTATATAT 707
consensus_220#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||