These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1152 fasta sequence [TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTCGTCTTCAGATGCAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACANCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTACAACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATGTGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCCACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCTCAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTCCATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCAAAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCATCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATGNGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAACACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAAACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAACAGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGATGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGCCTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCCGCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGCAATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGANNTAAGATATGGAC] [+] EMBL AL696545 [TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTCGTCTTCAGATGCAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACANCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTACAACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATGTGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCCACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCTCAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTCCATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCAAAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCATCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATGNGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAACACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAAACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAACAGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGATGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGCCTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCCGCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGCAATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGANNTAAGATATGGAC] consensusID : consensus_2214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTTCAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACACCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTACACAGATTGGGTGAAATCCTACTATTTTGCGCAAAGAAGAAAAAGGCTCAGTGTGGAAGAAGCAGCAGAANGAAGGACTAAGAGAACGTCACAGACCATTGAAAGGTTCATTCCAGGGTCATTTGGCGACGTCTTTACTTTGCGTTGCGCGTCTCACGCGTTTCTGTCGCTTGCTATCTCCCTCTCTCTCTAGTTCACTCTCATTTTCTACTCGGTCATTATCTGCAGCGTATGGTGTGTACAAATGCTACTGTTGTTGCTTTTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATACATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAAACGGATCCATATGAAATGGGGCTTAAAATCGAGGACCGCGCGTTCGCGATATGTGATTGTGGNACGCCTGGGACGTATACGGCCCGTAAGGG] [+] EMBL BX628317 [CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTTCAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACACCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTACACAGATTGGGTGAAATCCTACTATTTTGCGCAAAGAAGAAAAAGGCTCAGTGTGGAAGAAGCAGCAGAANGAAGGACTAAGAGAACGTCACAGACCATTGAAAGGTTCATTCCAGGGTCATTTGGCGACGTCTTTACTTTGCGTTGCGCGTCTCACGCGTTTCTGTCGCTTGCTATCTCCCTCTCTCTCTAGTTCACTCTCATTTTCTACTCGGTCATTATCTGCAGCGTATGGTGTGTACAAATGCTACTGTTGTTGCTTTTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATACATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAAACGGATCCATATGAAATGGGGCTTAAAATCGAGGACCGCGCGTTCGCGATATGTGATTGTGGNACGCCTGGGACGTATACGGCCCGTAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2214#0 TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTC-GTCTT 59 consensus_2214#1 ---------------------------CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTT 33 * ************************ ***** consensus_2214#0 CAGATGCAA-TAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACAN 118 consensus_2214#1 CAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACAC 93 ********* ************************************************* consensus_2214#0 CGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGC 178 consensus_2214#1 CGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGC 153 ************************************************************ consensus_2214#0 TCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTAC 238 consensus_2214#1 TCAACTGTAATT-GGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTA 212 ************ ******************************************** consensus_2214#0 AACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATG 298 consensus_2214#1 CACAGATTG--GGTGAAATCCTACTATTTTGCG-----CAAAGAAGAAAAAGGCTCAGTG 265 ******* ******************* * ** * ********** ** consensus_2214#0 TGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCC 358 consensus_2214#1 TGGAAGAA-------GCAGCAGAANGAAGGACTAA-GAGAACGTCAC--AGACCATTG-- 313 *** * * ** * ** ********* *********** ******* consensus_2214#0 ACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCT 418 consensus_2214#1 AAAGGTTCATTCC-AGGGTCATTTGGCGA--CGTCTTTACTTT-GCG--TTGCGCG-TCT 366 * *********** ****** **** * *********** ** ******* *** consensus_2214#0 CAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTC 478 consensus_2214#1 CA-CGCG--TTTCTGTCG---CTTGCTATCTCCCTCTCTCTCT-----AGTTCACTC--T 413 ** *** ** ****** * ***** * ** ******** * ***** consensus_2214#0 CATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCA 538 consensus_2214#1 CATTTTCT--ACTCGG----TCATTA---TCTGCAGCGTATGGTGTGTACAAATGCTACT 464 ****** **** * ***** ** ** * ** * * * consensus_2214#0 AAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCA 598 consensus_2214#1 GTTGTTGCTT---TTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATA 521 *** * * * ** ** ** *** ** *** * consensus_2214#0 TCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATG 658 consensus_2214#1 CATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAA-----ACGGATCCATA 576 * * * * * * * ***** * *** * * ** * ** consensus_2214#0 NGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAA 718 consensus_2214#1 TGAAATGGGGCTTAAAATC--GAGGACCGCGCGTTCGCGATATG-TGAT----TGTGGNA 629 * *** *** **** * * * * * * * * ** * * * consensus_2214#0 CACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAA 778 consensus_2214#1 CGCCTGGGACGT-ATACGGCCCGTAAGGG------------------------------- 657 * * * ** * ** * *** consensus_2214#0 ACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAAC 838 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 AGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGA 898 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 TGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGC 958 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 CTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCC 1018 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 GCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGC 1078 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 AATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGA 1138 consensus_2214#1 ------------------------------------------------------------ consensus_2214#0 NNTAAGATATGGAC 1152 consensus_2214#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||