These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAACAAAGACCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACCTTCGNTNTCGCCCGTGCTCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGGGCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTTCTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATACACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCCGGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGAACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCAGAATTTAGGAGGGCACAGGTGCAT] [+] EMBL AL696766 [TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAACAAAGACCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACCTTCGNTNTCGCCCGTGCTCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGGGCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTTCTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATACACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCCGGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGAACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCAGAATTTAGGAGGGCACAGGTGCAT] consensusID : consensus_2249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CCGTAACCAGTAACCAAAGACCCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTAGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACTTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGGCGACGCTGGACATCTTTTTGGGCGATTTCCGTGTACCGTACGATCTGCCGGCCGATCAGACGAATGCGTGCAACTTCTTCGAAGCTGGCAGCTGCCCGGTGACGGCGGGTGAGTTCATCAACTATCACCTGAGCACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACCTGCAGCTGCAGCTTACCGACGACAACGACCAGCCACTGTTCTGCTTCCGCTCGTCTGCACAGATTGTGGCCGTCTAATGTGTGTAATAGAAATACAAATGTAATAAAATTGACTGATTGGATTGGGTTGGAAAAAAAAACTCACCCCTC] [+] EMBL BM595135 [CCGTAACCAGTAACCAAAGACCCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTAGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACTTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGGCGACGCTGGACATCTTTTTGGGCGATTTCCGTGTACCGTACGATCTGCCGGCCGATCAGACGAATGCGTGCAACTTCTTCGAAGCTGGCAGCTGCCCGGTGACGGCGGGTGAGTTCATCAACTATCACCTGAGCACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACCTGCAGCTGCAGCTTACCGACGACAACGACCAGCCACTGTTCTGCTTCCGCTCGTCTGCACAGATTGTGGCCGTCTAATGTGTGTAATAGAAATACAAATGTAATAAAATTGACTGATTGGATTGGGTTGGAAAAAAAAACTCACCCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2249#0 TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAAC-AAAGACC-GC 58 consensus_2249#1 -----------------------------------CCGTAACCAGTAACCAAAGACCCGC 25 * * * ******* ******* ** consensus_2249#0 CAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTT 118 consensus_2249#1 CAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGG-CGTT 84 ************************************************* ***** **** consensus_2249#0 CGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGT 178 consensus_2249#1 CGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGT 144 ************************************************************ consensus_2249#0 ANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGA 238 consensus_2249#1 AGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGA 204 * ************** ******************************************* consensus_2249#0 CCTTCGNTNTCGCCCGTGC-TCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGG 297 consensus_2249#1 C-TTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGG-CGACGCTGGACATCTTT--TTGG 260 * **** * ******* ******* ******** ***************** ** consensus_2249#0 GCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTT 357 consensus_2249#1 GCGA-TTTCCGTGTACCGTACGATCTG-CCGGCCGATCA-GACGAATGC-GTGCAA-CTT 315 **** ********************** *********** ********* ***** *** consensus_2249#0 CTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATAC 417 consensus_2249#1 CTTCG--AAGCTGGCAG--CTGCCCGGTGACGGC----GGGTGAG-TTCATCAACTAT-C 365 ***** * ******* *** ****** * ****** ************ * consensus_2249#0 ACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCC 477 consensus_2249#1 AC-CTGAGC-ACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACC-TGCAGCTGC 422 ** ***** ******** * * ** * * ** * * * * * * * * * consensus_2249#0 GGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGA 537 consensus_2249#1 AGCTTACCGACGACA-ACGACCAGCCAC----TGTTCTGCTTCCGCTCGTCTGCA-CAGA 476 * * * ** * ** ** ** * ** * * ** * * ** consensus_2249#0 ACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCA 597 consensus_2249#1 TTGTGGCCGTCTA--ATGTGTGTAATAGAAATACAAATGTAAT--AAAATTGACTGATTG 532 * * * * *** ** * * ** **** * * * *** * ** consensus_2249#0 GAAT---TTAGGAGGGCACAGGTGCAT--- 621 consensus_2249#1 GATTGGGTTGGAAAAAAAAACTCACCCCTC 562 ** * ** * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||