These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGGAAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATTCAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGACGCACCGATTCTGAACGGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGGTTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCACGTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGTGTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGGAAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTATCGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAAACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCCGGGAACAGGCGGAGCAACATTGCGGGTGCTGC] [+] EMBL BX468389 [AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGGAAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATTCAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGACGCACCGATTCTGAACGGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGGTTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCACGTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGTGTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGGAAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTATCGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAAACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCCGGGAACAGGCGGAGCAACATTGCGGGTGCTGC] consensusID : consensus_2261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [AGGGCAAGAATTGCCCCGAGGTTNAAACGGTGTAAACTTGACATCGAACCGGGTACTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGAGATACGGGAAAACATCCTGTA] [+] EMBL AL696842 [AGGGCAAGAATTGCCCCGAGGTTNAAACGGTGTAAACTTGACATCGAACCGGGTACTCGACTGCCGTCGTGGGACGCAGCGGCTCCGGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTTCGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGAGCAGTTAATCAGGAACCGGTACTGTTCAGCGGAGATACGGGAAAACATCCTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2261#0 AGGCAAGAATTCGGCACGATGGATCGGTTCGCCAGCAGGCTGTGGGAAATCATCGACCGG 60 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 AAGTATGCAATCCCGATCGATGGAGGAATTGAGGTGAGCAATCCACCGGCGGGGCAGATT 120 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 CAGTTCCGTGACGTTATCTTCCACTATCCATCCCGACCGGA--CGCACCGAT-TCTGAAC 177 consensus_2261#1 --------------------------------AGGGCAAGAATTGCCCCGAGGTTNAAAC 28 * * ** ** **** * *** consensus_2261#0 GGTGTAAACTTGACAATCGAACCGGGTACCTCGACTGCCGTCGTGGGACGCAGCGGCTCC 237 consensus_2261#1 GGTGTAAACTTGACA-TCGAACCGGGTAC-TCGACTGCCGTCGTGGGACGCAGCGGCTCC 86 *************** ************* ****************************** consensus_2261#0 GGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTT 297 consensus_2261#1 GGCAAATCGACCATCGCATCGTTAATGTTAAGGCTTTACGATCCGGCACAAGGATCCGTT 146 ************************************************************ consensus_2261#0 CGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGA 357 consensus_2261#1 CGGCTGGATGGGACCGATCTGCGCGACCTAAATCCCTCCTCACTGCGGCGCCACATCGGA 206 ************************************************************ consensus_2261#0 GCAGTTAATCAGGAACCGGTACTGTTCAGCGGCAGCATACGGGAAAACATCCTGTACGGG 417 consensus_2261#1 GCAGTTAATCAGGAACCGGTACTGTTCAGCGGAG--ATACGGGAAAACATCCTGTA---- 260 ******************************** ******************** consensus_2261#0 TTGAACATGGGCGAGAAAATCTCCGAAAGCGCCTTCCAGCGGGTCGTGCGGGAAGCGCAC 477 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 GTGGACGAGTTTGTGCGCCACTTCCCGGACGGGCTGGATACCCTCGTCGGCCAGCGCGGT 537 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 GTGATGCTGAGCGGCGGGCCAAAAGCAACGCGTTGCGATCGCGCGGGCAAGTCATACGGG 597 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 AAGCCCANAACAGTACTGAGTCCTGGATGAGGGCGACCAAGGGCAACTTGGACGCGGTAT 657 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 CGGAGGAGCTGGATTAGCCAGGAACGGCGGCCTCCGAAGNCGGGGTTGGACCCAAAGGAA 717 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 ACCGGGGAACCGTGGACTTGACGGATTCGGCCCAACCCGGGCTTGAAGNCACACGATTCC 777 consensus_2261#1 ------------------------------------------------------------ consensus_2261#0 GGGAACAGGCGGAGCAACATTGCGGGTGCTGC 809 consensus_2261#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||