These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCCAGGCGGAGAGCAAAAAGGACACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTTTCACCACTGCTGCATGTCGCTGTGGATTAAGCAGAACAATCGGTGCCCGCTGTGCCAGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAACCATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTTAAAGTGGAAAGGAGAGAAAGAAACGTCATACGAATCTCGTTGGTTGCATGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG] [+] EMBL BM591754 [CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCCAGGCGGAGAGCAAAAAGGACACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTTTCACCACTGCTGCATGTCGCTGTGGATTAAGCAGAACAATCGGTGCCCGCTGTGCCAGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAACCATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTTAAAGTGGAAAGGAGAGAAAGAAACGTCATACGAATCTCGTTGGTTGCATGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG] consensusID : consensus_2267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [AGATCGGCCCGAGGNANATATCGTCCGCATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAAAAGGACCACGCTCGGCGCCAGGANTGTGTCGTCGTGTGGGGCGAATGCACCATTCCTTTCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCCAGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGCAACCAATCAACAACATCCAACAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGTTGGTTGCCCTGTTGTTGTCTAGGATTTTTC] [+] EMBL AL696894 [AGATCGGCCCGAGGNANATATCGTCCGCATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAAAAGGACCACGCTCGGCGCCAGGANTGTGTCGTCGTGTGGGGCGAATGCACCATTCCTTTCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCCAGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGCAACCAATCAACAACATCCAACAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGTTGGTTGCCCTGTTGTTGTCTAGGATTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2267#0 ------CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAA 54 consensus_2267#1 AGATCGGCCCGAGGNANATATCGTCCGCA-TTTGTGCGTTGGTCGTGAACGGTGGAATAA 59 * ** ************ ****************************** consensus_2267#0 TGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGT 114 consensus_2267#1 TGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGT 119 ************************************************************ consensus_2267#0 TTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGT 174 consensus_2267#1 TTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGT 179 ************************ *********************************** consensus_2267#0 GCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCC-AGGCGGAGAGCAAA 233 consensus_2267#1 GCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAA 239 ********** *********************** *** ****** ************** consensus_2267#0 AAGGAC-ACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTT 292 consensus_2267#1 AAGGACCACGCTCGGC-GCCAGGANTGTGTCGTCGTGTGGGGCGAATGCA-CCATTCCTT 297 ****** ********* ******* ************************* ********* consensus_2267#0 TCACCACTG-CTGCATGTCGCTGTGGATTAAG-CAGAACAATC--GGTGCCCGCTGTGCC 348 consensus_2267#1 TCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCC 357 ********* ********************* ********** ******** ****** consensus_2267#0 AGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAAC 408 consensus_2267#1 AGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGC-AACCAATCAACAA-- 414 ******************** *********************** *********** * consensus_2267#0 CATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACAT 468 consensus_2267#1 CATCCAAC-AATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACAT 473 ******** *************************************************** consensus_2267#0 TCATAGGAGATTTAAA--GTGGAAAGGAGAGA----AAGAAAC-GTCATACGAATCTCGT 521 consensus_2267#1 TCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGT 533 ************ ** ** * ** **** ******* **************** consensus_2267#0 TGGTTGCA-TGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG 577 consensus_2267#1 TGGTTGCCCTGTTGTTGTCTAGGATTTTTC--------------------------- 563 ******* ************* **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||