These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCATGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAATCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGTGAGAGAGAGCATGAGAGTTGAGAGCAGTTCAGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAATACTTCCTCCCCCCCTCCTTACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGGGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTCGTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGGCACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA] [+] EMBL BM636520 [CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCATGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAATCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGTGAGAGAGAGCATGAGAGTTGAGAGCAGTTCAGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAATACTTCCTCCCCCCCTCCTTACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGGGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTCGTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGGCACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA] consensusID : consensus_2275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAATCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTCAGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCTTACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC] [+] EMBL BX602596 [ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAATCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTCAGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCTTACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2275#0 CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCA 60 consensus_2275#1 ------------------------------------------------------------ consensus_2275#0 TGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAA 120 consensus_2275#1 -------------------ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAA 41 ******* ************ ******************** consensus_2275#0 TCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGT 180 consensus_2275#1 TCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGT 101 ************* ********************************** *********** consensus_2275#0 G------------------------------AGAGAGAGCATGAGAGTTGAGAGCAGTTC 210 consensus_2275#1 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTC 161 * *********** ***************** consensus_2275#0 AGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTT 270 consensus_2275#1 AGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTT 221 ******** *************************************************** consensus_2275#0 CATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAA-----TACTTCCTCCCCCCCTCCT 325 consensus_2275#1 CATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCT 281 ********************************** * * * ** ** ******* consensus_2275#0 TACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGC 385 consensus_2275#1 TACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGC 341 ******************* **************************************** consensus_2275#0 AAGCGAATACCAGAGACAGGCG-GGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCA 444 consensus_2275#1 AAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCA 401 ********************** ************* *********************** consensus_2275#0 GTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGG-A 503 consensus_2275#1 GTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGA 461 ******************************************* ************** * consensus_2275#0 AGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTC 563 consensus_2275#1 AGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC-------------- 507 ********************************************** consensus_2275#0 GTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGG 623 consensus_2275#1 ------------------------------------------------------------ consensus_2275#0 CACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA 681 consensus_2275#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||