These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACAGTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAATTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCAACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGTGACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGTGTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGCCCTTTGGCAACATTCAGGCCCCGACGTGGGCCACCGCAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCGCCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGCGGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGACAGACGCCCCGCAACAACTA] [+] EMBL BM610975 [CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACAGTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAATTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCAACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGTGACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGTGTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGCCCTTTGGCAACATTCAGGCCCCGACGTGGGCCACCGCAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCGCCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGCGGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGACAGACGCCCCGCAACAACTA] consensusID : consensus_2287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGATCGGCCNGAGGTGCAATAGAATGGCTTATGTAGTCACAAAGTGTCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCACCGGCAAAGTCCCGCNCTGGCCAAAAAACCCAGTGCCACGCCTCGGGGCTGTGAACCAAATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGGGTGACCGAATCCAGGGAACTTAACTTACCAAAAAAATT] [+] EMBL AL697032 [AGATCGGCCNGAGGTGCAATAGAATGGCTTATGTAGTCACAAAGTGTCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCACCGGCAAAGTCCCGCNCTGGCCAAAAAACCCAGTGCCACGCCTCGGGGCTGTGAACCAAATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGGGTGACCGAATCCAGGGAACTTAACTTACCAAAAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2287#0 CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACA 60 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 GTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAA 120 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCA 180 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 ACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGT 240 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 GACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGT 300 consensus_2287#1 ----------AGATCGGCCNGAGGTG----CAATAGAATGGC-TTATGTAGTCACAAAGT 45 ** ** * * *** ************ ***************** consensus_2287#0 GTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAG 360 consensus_2287#1 GTCC-TAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAG 104 **** ******************************************************* consensus_2287#0 CAAGTGAATAATAACGGTGCTCCCCG-AAGTGTGAGTGGAAACCAAAACCATGGCGCTAG 419 consensus_2287#1 CAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAG 164 ************************** ********************************* consensus_2287#0 TGAACTATACCCTG-----CCCTTTGGCAAC---ATTCAGG---CCCCGACGTGGGCCAC 468 consensus_2287#1 TGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCAC 224 ************** * ** ***** ***** * *** ************ consensus_2287#0 CG-CAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCG 527 consensus_2287#1 CGGCAAAGTCCCGCNCTGGCCAAAAAACCCAG--TGCCACGCCTCGGGGCTGTGAACCAA 282 ** *** * * *** * ** * ** * ** * * * ** consensus_2287#0 CCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGC 587 consensus_2287#1 ------ATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGG-GTGAC 335 *** * * * ** * * * * * ** * * * * consensus_2287#0 GGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGAC 647 consensus_2287#1 CGAATCCAGGGAACTTAACTTACCAAAAAAATT--------------------------- 368 * * ** * * * ** * ** * * consensus_2287#0 AGACGCCCCGCAACAACTA 666 consensus_2287#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||