These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGATGGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTGACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCGCATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATGTGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCCTTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTTTGGCATAAAATTAAGGTACACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGTCAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGGGCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAATTTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTTCCCCCTCGCGGGTGC] [+] EMBL BM601772 [CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGATGGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTGACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCGCATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATGTGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCCTTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTTTGGCATAAAATTAAGGTACACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGTCAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGGGCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAATTTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTTCCCCCTCGCGGGTGC] consensusID : consensus_2295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CCGCGGACGCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATTTTCAGTTGGAATTAGACCGATCCGCTACCGGGGGGGGTGTTGTGCGCTTCGAGGCGGAGAGAGAAAGAACAAAAACAAACAAAAAAAGGAATAATATCGTGTGTACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGCGAACGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGGACTGTTGAGCCGACGATCTGACTGTTGACACAGCAACCTAATTGGAAACAGCAGCGGGATTT] [+] EMBL BM598606 [CCGCGGACGCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATTTTCAGTTGGAATTAGACCGATCCGCTACCGGGGGGGGTGTTGTGCGCTTCGAGGCGGAGAGAGAAAGAACAAAAACAAACAAAAAAAGGAATAATATCGTGTGTACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGCGAACGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGGACTGTTGAGCCGACGATCTGACTGTTGACACAGCAACCTAATTGGAAACAGCAGCGGGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2295#0 CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGAT 60 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 GGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTG 120 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 ACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCG 180 consensus_2295#1 ----------CCGCGGAC-GCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATT- 48 * ** * *** * * * * * *** ** ** consensus_2295#0 CATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATG 240 consensus_2295#1 -TTCAGTTGGAATTAGAC---CGATCCGCTACCGGGGGGGGTG--TTGTGCGCTTCGAGG 102 ** * ** * * **** * * * * * * * * ** ** * consensus_2295#0 TGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCC 300 consensus_2295#1 CGGAGAGAGAAA-----GAACAAAAACAAA--CAAAAAAAGGAATAATATCGTGTG---- 151 * * **** ** * * **** * **** * * * * * consensus_2295#0 TTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTT-TGGCATAAAATTAAGGTAC 359 consensus_2295#1 ----TACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGC 207 * * * ***** ** * * * * ** * ** * * * consensus_2295#0 ACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGT 419 consensus_2295#1 G-AACGGGTGTAAACACCGAACAACAGCC-CCAAACCACACGGAAGGACTGTTGAGCCGA 265 * * **** * ** ** ** * * *** * ** * * ** * * consensus_2295#0 CAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGG 479 consensus_2295#1 CGATCTGACTGTTGACACAGCAACCTAATTGGAA-ACAGCAGCGGGATTT---------- 314 * * ** *** * * *** ** * ** ***** consensus_2295#0 GCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAAT 539 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 TTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTT 599 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 CCCCCTCGCGGGTGC 614 consensus_2295#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||