cluster # 23

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 23 cluster # 23 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_23#0 length = 664 sequences # 1

consensus_23#1 length = 453 sequences # 1

consensusID : consensus_23#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGCGCTTGAGTCAGTGTGTCTGCTGCTCGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAGGATAGCTTCATCGCGTCGATCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCGTGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCATCGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGATCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGATCGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGTGGGCGACGTGCTGCTGTCGGCCGCC]

[+] EMBL BM586993             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGCGCTTGAGTCAGTGTGTCTGCTGCTCGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAGGATAGCTTCATCGCGTCGATCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCGTGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCATCGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGATCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGATCGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGTGGGCGACGTGCTGCTGTCGGCCGCC]




>consensus_23#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATCC
GCCCCTTCCGGTCAAGATGGCGCTTGAGTCAGTGTGTCTGCTGCTCGGGGAGGACGATCG
GGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAGGATAGCTTCATCGCGTCGAT
CGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCGTGAAAAGATGAAATCGAAGTA
CCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCC
CATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCC
GCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAG
GGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCATCGCCGCGTACAAGGAGGAGTA
CGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGATCTCGAGAACGTGCAGGCGAA
GGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGATCGAGCGGGAGCGCTGGGAGGC
GACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGTGGGCGACGTGCTGCTGTCGGC
CGCC

consensusID : consensus_23#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACACGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATACAATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAATATGATTTTTTCCTTTCCTCTTCTCCGACTTCCCGGCGAGCACAGCGATGAGGTGCGCGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT]

[+] EMBL BM599261             [CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACACGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATACAATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAATATGATTTTTTCCTTTCCTCTTCTCCGACTTCCCGGCGAGCACAGCGATGAGGTGCGCGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT]




>consensus_23#1
CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACA
CGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATAC
AATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAA
TATGATTTTTTCCTTTCCTCTTCTCCGACTTCCCGGCGAGCACAGCGATGAGGTGCGCGA
AAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGC
CTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACAT
GCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACAC
GAACATCAAGCACGGCAGGGAGGTGAAGGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_23#0      ----------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCC-------CA 43
consensus_23#1      CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACA 60
                               **     ** **     *   **       *  *** **        **

consensus_23#0      CGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGC-GCTTGAGTCAGTGTGTC-TGC 101
consensus_23#1      CGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATAC 120
                    ****  **    *    **  **    **     *  * ** * *    *  ** * * *

consensus_23#0      TGCT-CGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAG 160
consensus_23#1      AATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAA 180
                       * *  * *  *** *    *  *** **      *  *   **  *   *     * 

consensus_23#0      GATAGCTTCATCGCGTCGA-TCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCG 219
consensus_23#1      TATGATTTTTTCCTTTCCTCTTCTCCGACT--TCCCGGCGAGCAC-AGCGATGAGGTGCG 237
                     **   **  **   **   *  **   **   * *  **  **  * ************

consensus_23#0      TGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCG 279
consensus_23#1      CGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCG 297
                     ***********************************************************

consensus_23#0      TGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGA 339
consensus_23#1      TGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGA 357
                    ************************************************************

consensus_23#0      CATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGA 399
consensus_23#1      CATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGA 417
                    ************************************************************

consensus_23#0      CACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCAT 459
consensus_23#1      CACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT------------------------ 453
                    ************************************                        

consensus_23#0      CGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGA 519
consensus_23#1      ------------------------------------------------------------
                                                                                

consensus_23#0      TCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGAT 579
consensus_23#1      ------------------------------------------------------------
                                                                                

consensus_23#0      CGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGT 639
consensus_23#1      ------------------------------------------------------------
                                                                                

consensus_23#0      GGGCGACGTGCTGCTGTCGGCCGCC 664
consensus_23#1      -------------------------