These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTTGAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAACCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAAAGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGTTAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTTCATCTATATGACGTTTCATAGCCCATTTTGTTGAAATGTGGTTCATTTTTACGATTAGTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC] [+] EMBL BX602968 [GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTTGAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAACCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAAAGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGTTAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTTCATCTATATGACGTTTCATAGCCCATTTTGTTGAAATGTGGTTCATTTTTACGATTAGTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC] consensusID : consensus_2301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [CGACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGTTGTGGTTGTTGGTTTGTTTTTTTTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAG] [+] EMBL BM582992 [CGACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGTTGTGGTTGTTGGTTTGTTTTTTTTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2301#0 GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTT 60 consensus_2301#1 ------------------------------------------------------------ consensus_2301#0 GAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAA 120 consensus_2301#1 ------------------------------------------------------------ consensus_2301#0 CCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAA 180 consensus_2301#1 ------------------------------------------------------------ consensus_2301#0 AGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGT 240 consensus_2301#1 ------------------------------------------------------------ consensus_2301#0 TAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTT 300 consensus_2301#1 -----------------------------------------------------------C 1 consensus_2301#0 CATCTATATGACGTTTCATA-GCCCATTTTGTTGAAATGTGGTTCATT-TTTACGATTAG 358 consensus_2301#1 GACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGT--TGTGGTTGTTGGTTTGTTTTTTT 59 * * * * * ** * ** *** *** ******* * *** ** consensus_2301#0 TTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAAC 418 consensus_2301#1 TTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAAC 119 ************************************************************ consensus_2301#0 GGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAG 478 consensus_2301#1 GGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAG 179 ************************************************************ consensus_2301#0 CAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC 519 consensus_2301#1 CAGCTATGCAAGGATAAG----------------------- 197 ****************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||